CX289277
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 8.937e-28 Identity = 59/95 (62.11%), Postives = 69/95 (72.63%), Query Frame = 1 Query: 1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285 GNKVD+K+ +VKAK + FHRKKNLQYY+ISAKSNYNFEKPF +LARKL GDPNL FV PALAPPEV +D + LPD++DD Sbjct: 121 GNKVDIKDMKVKAKPILFHRKKNLQYYDISAKSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEEDD 215
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RANT_MOUSE (GTP-binding nuclear protein Ran, testis-specific isoform OS=Mus musculus GN=Rasl2-9 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.525e-27 Identity = 59/95 (62.11%), Postives = 69/95 (72.63%), Query Frame = 1 Query: 1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285 GNKVDVK+ +VKAK + FHRKKNLQYY+ISA+SNYNFEKPF +LARKL GDPNL FV PALAPPEV +D + LPD++DD Sbjct: 121 GNKVDVKDMKVKAKPILFHRKKNLQYYDISARSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEEDD 215
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: GSP1_NEUCR (GTP-binding nuclear protein GSP1/Ran OS=Neurospora crassa GN=gsp-1 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 7.566e-27 Identity = 58/95 (61.05%), Postives = 68/95 (71.58%), Query Frame = 1 Query: 1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285 GNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+ L FV +PALAPP +D PLP+++DD Sbjct: 118 GNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNNALEFVAAPALAPPTAVVDQELMEKYRAEMDEAAQMPLPNEEDD 212
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 5.611e-22 Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 1 Query: 1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI--DXXXXXXXXXXXXXXXSQ--PLPDDDDDAF 291 GNKVD K+ +VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDPNL+ VE ALAP ++ + D +Q LPD++DD F Sbjct: 122 GNKVDSKDSKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPNLNLVEGIALAPVDIHMTEDQIKQLQMEHDEAMNLAQQGQLPDEEDDEF 222
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_PLAFA (GTP-binding nuclear protein Ran OS=Plasmodium falciparum PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.132e-21 Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1 Query: 1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 210 GNKVDVK+RQVK++Q+ FHRK+NLQYY++SA+SNYNFEKPFL+LAR+L+ PNL FV A A PE QID Sbjct: 120 GNKVDVKDRQVKSRQIQFHRKRNLQYYDLSARSNYNFEKPFLWLARRLSNQPNLVFVGEHAKA-PEFQID 188
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.785e-21 Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 1 Query: 1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ----IDXXXXXXXXXXXXXXXSQP--LPDDDDDAF 291 GNKVD K+R+VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDP L+ VE AL P+ + D +Q LPDD+DD F Sbjct: 122 GNKVDSKDRKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPTLNLVEGIALVAPDTEHVMTEDQIKQLEMEQAEAMNLAQQGVLPDDEDDEF 224
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_DICDI (GTP-binding nuclear protein Ran OS=Dictyostelium discoideum GN=ranA PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.079e-20 Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 1 Query: 1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285 GNKVDVK+R+VK Q+ FHR+ NL YY++SAKSNYNFEKPF++L KL G+ + V+ P L PE +D + PLP+D+DD Sbjct: 117 GNKVDVKDRKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAVTLVQQPTLKLPETVLDSNLMSLYEKEVADAAALPLPEDNDD 211
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN4_ARATH (GTP-binding nuclear protein Ran-4 OS=Arabidopsis thaliana GN=RAN4 PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 5.252e-20 Identity = 51/89 (57.30%), Postives = 60/89 (67.42%), Query Frame = 1 Query: 1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPL 267 GNKVDV +RQ+K K V++HRKK LQYYE+SAK+N NFEKPFLYLAR++AGD L FVES PE QID +QPL Sbjct: 124 GNKVDVPSRQIKPKHVSYHRKKCLQYYEMSAKNNCNFEKPFLYLARRIAGDAKLSFVES-----PEAQIDNLDVESLQLLTVEAGTQPL 207
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_GIALA (GTP-binding nuclear protein Ran OS=Giardia lamblia PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 4.161e-17 Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 1 Query: 1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDD 279 GNK DVK+R+++ + V FHR KN+ Y EISAK N+N+E P L + R L DP + F ++PAL P ++ +D + PLPDDD Sbjct: 134 GNKCDVKDREIRTQTVKFHRSKNIPYVEISAKDNFNYELPILSILRTLLNDPTIQFSQAPALLPADIGMDAATREQINKDLEAVNNVPLPDDD 226
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 9.270e-17 Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 1 Query: 1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLP 270 GNKVD+ +++ K V F RK N+ E+SAKSNYN EKPF+YL RKL GDP+L V+SPA+ PP+V S+PLP Sbjct: 121 GNKVDIMHKKTWKKGVDFDRKTNIYLIEMSAKSNYNVEKPFVYLLRKLVGDPSLQLVQSPAIQPPKVVFTDEMSRQVESLFNEAKSKPLP 210 The following BLAST results are available for this feature:
BLAST of CX289277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289277 ID=CX289277; Name=CX289277; organism=Citrus clementina; type=EST; length=581bpback to top |