CX289277

Overview
NameCX289277
Unique NameCX289277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14105 contig Ccv1_Contig14105:472..1050. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.937e-28
Identity = 59/95 (62.11%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVD+K+ +VKAK + FHRKKNLQYY+ISAKSNYNFEKPF +LARKL GDPNL FV  PALAPPEV +D               +  LPD++DD
Sbjct:  121 GNKVDIKDMKVKAKPILFHRKKNLQYYDISAKSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEEDD 215          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RANT_MOUSE (GTP-binding nuclear protein Ran, testis-specific isoform OS=Mus musculus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.525e-27
Identity = 59/95 (62.11%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVDVK+ +VKAK + FHRKKNLQYY+ISA+SNYNFEKPF +LARKL GDPNL FV  PALAPPEV +D               +  LPD++DD
Sbjct:  121 GNKVDVKDMKVKAKPILFHRKKNLQYYDISARSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEEDD 215          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: GSP1_NEUCR (GTP-binding nuclear protein GSP1/Ran OS=Neurospora crassa GN=gsp-1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.566e-27
Identity = 58/95 (61.05%), Postives = 68/95 (71.58%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+  L FV +PALAPP   +D                 PLP+++DD
Sbjct:  118 GNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNNALEFVAAPALAPPTAVVDQELMEKYRAEMDEAAQMPLPNEEDD 212          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.611e-22
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI--DXXXXXXXXXXXXXXXSQ--PLPDDDDDAF 291
            GNKVD K+ +VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDPNL+ VE  ALAP ++ +  D               +Q   LPD++DD F
Sbjct:  122 GNKVDSKDSKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPNLNLVEGIALAPVDIHMTEDQIKQLQMEHDEAMNLAQQGQLPDEEDDEF 222          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_PLAFA (GTP-binding nuclear protein Ran OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.132e-21
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 210
            GNKVDVK+RQVK++Q+ FHRK+NLQYY++SA+SNYNFEKPFL+LAR+L+  PNL FV   A A PE QID
Sbjct:  120 GNKVDVKDRQVKSRQIQFHRKRNLQYYDLSARSNYNFEKPFLWLARRLSNQPNLVFVGEHAKA-PEFQID 188          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.785e-21
Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ----IDXXXXXXXXXXXXXXXSQP--LPDDDDDAF 291
            GNKVD K+R+VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDP L+ VE  AL  P+ +     D               +Q   LPDD+DD F
Sbjct:  122 GNKVDSKDRKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPTLNLVEGIALVAPDTEHVMTEDQIKQLEMEQAEAMNLAQQGVLPDDEDDEF 224          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_DICDI (GTP-binding nuclear protein Ran OS=Dictyostelium discoideum GN=ranA PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.079e-20
Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVDVK+R+VK  Q+ FHR+ NL YY++SAKSNYNFEKPF++L  KL G+  +  V+ P L  PE  +D               + PLP+D+DD
Sbjct:  117 GNKVDVKDRKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAVTLVQQPTLKLPETVLDSNLMSLYEKEVADAAALPLPEDNDD 211          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN4_ARATH (GTP-binding nuclear protein Ran-4 OS=Arabidopsis thaliana GN=RAN4 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.252e-20
Identity = 51/89 (57.30%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPL 267
            GNKVDV +RQ+K K V++HRKK LQYYE+SAK+N NFEKPFLYLAR++AGD  L FVES     PE QID               +QPL
Sbjct:  124 GNKVDVPSRQIKPKHVSYHRKKCLQYYEMSAKNNCNFEKPFLYLARRIAGDAKLSFVES-----PEAQIDNLDVESLQLLTVEAGTQPL 207          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_GIALA (GTP-binding nuclear protein Ran OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.161e-17
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDD 279
            GNK DVK+R+++ + V FHR KN+ Y EISAK N+N+E P L + R L  DP + F ++PAL P ++ +D               + PLPDDD
Sbjct:  134 GNKCDVKDREIRTQTVKFHRSKNIPYVEISAKDNFNYELPILSILRTLLNDPTIQFSQAPALLPADIGMDAATREQINKDLEAVNNVPLPDDD 226          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.270e-17
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLP 270
            GNKVD+ +++   K V F RK N+   E+SAKSNYN EKPF+YL RKL GDP+L  V+SPA+ PP+V                  S+PLP
Sbjct:  121 GNKVDIMHKKTWKKGVDFDRKTNIYLIEMSAKSNYNVEKPFVYLLRKLVGDPSLQLVQSPAIQPPKVVFTDEMSRQVESLFNEAKSKPLP 210          
The following BLAST results are available for this feature:
BLAST of CX289277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RANT_RAT8.937e-2862.11GTP-binding nuclear protein Ran, testis-specific i... [more]
RANT_MOUSE1.525e-2762.11GTP-binding nuclear protein Ran, testis-specific i... [more]
GSP1_NEUCR7.566e-2761.05GTP-binding nuclear protein GSP1/Ran OS=Neurospora... [more]
RAN_TETPY5.611e-2251.49GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]
RAN_PLAFA2.132e-2170.00GTP-binding nuclear protein Ran OS=Plasmodium falc... [more]
RAN_TETTH2.785e-2150.49GTP-binding nuclear protein Ran OS=Tetrahymena the... [more]
RAN_DICDI3.079e-2048.42GTP-binding nuclear protein Ran OS=Dictyostelium d... [more]
RAN4_ARATH5.252e-2057.30GTP-binding nuclear protein Ran-4 OS=Arabidopsis t... [more]
RAN_GIALA4.161e-1743.01GTP-binding nuclear protein Ran OS=Giardia lamblia... [more]
RANL_DROME9.270e-1747.78GTP-binding nuclear protein Ran-like OS=Drosophila... [more]

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Properties
Property NameValue
Genbank descriptionC02011B08SK IF1 Citrus clementina cDNA clone C02011B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289277 ID=CX289277; Name=CX289277; organism=Citrus clementina; type=EST; length=581bp
GGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGCAAAGCAGGTTAC
CTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTTCTGCCAAGAGCA
ACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGGAAGCTTGCTGGG
GACCCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGCTCCTCCAGAAGT
ACAGATTGACTTAGCTGCACAGCAACAACATGAAGCCGAGCTTGCCGCAG
CAGCTAGCCAGCCTCTTCCTGATGACGATGATGATGCATTTGAGTAGAGA
GGAACTGCTTGGACGGGTGTAGGCGCAACCTCTCATACTGCTGCTTGACT
TAAAAATGCTGTTATTTTGGAAATTTTCAACACATGGCGGAGATTTGGTT
ATCAGCGTAGGGGTGACCATCGAGAACAATGGATTATAGTAGTTAGGTTG
TACCTTTAGATACTTGTTGGAGACTCTTTTTATGCTTGTTTTTTTTTGGG
AGTTTTCTTATTACTGGAATGATGTTTCAGTGACGTGGATTATGCCATTC
CAATACTTTTATGCAAAAAAAAAAAAAAAAA
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