CX289282

Overview
NameCX289282
Unique NameCX289282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10147 contig Ccv1_Contig10147:3..539. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289282 vs. ExPASy Swiss-Prot
Match: RL38_LONON (60S ribosomal protein L38 OS=Lonomia obliqua GN=RpL38 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.173e-20
Identity = 46/69 (66.67%), Postives = 61/69 (88.41%), Query Frame = 3
Query:   42 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 248
            MP++I +IKDFLL ARRKDA+SV+IK++ + VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:    1 MPREIKDIKDFLLKARRKDAKSVEIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of CX289282 vs. ExPASy Swiss-Prot
Match: RL38_ANOGA (60S ribosomal protein L38 OS=Anopheles gambiae GN=RpL38 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.173e-20
Identity = 46/69 (66.67%), Postives = 59/69 (85.51%), Query Frame = 3
Query:   42 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 248
            MP++I E+KDFL+ ARRKDAR+VKIK++    KFK+RCS+YLYTL V D EKA+KLKQSLPPGL V+++
Sbjct:    1 MPQEIKEVKDFLIKARRKDARAVKIKKNETNTKFKIRCSRYLYTLVVKDMEKAEKLKQSLPPGLQVKEV 69          
BLAST of CX289282 vs. ExPASy Swiss-Prot
Match: RL38_MACHI (60S ribosomal protein L38 OS=Maconellicoccus hirsutus GN=RpL38 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.531e-20
Identity = 46/69 (66.67%), Postives = 60/69 (86.96%), Query Frame = 3
Query:   42 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 248
            MP++I EIK+FL+ ARRKDA+SVKIK++   VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:    1 MPREIKEIKEFLIKARRKDAKSVKIKKNPTNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEI 69          
BLAST of CX289282 vs. ExPASy Swiss-Prot
Match: RL38_OSTOS (60S ribosomal protein L38 OS=Ostertagia ostertagi GN=rpl-38 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.927e-20
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 3
Query:   42 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 248
            MPKQI EIKDFL+ ARRKDA+ VKIK++   VKFKVRCS+YL+TL V D +KA+KLKQSLPPG+ V +L
Sbjct:    1 MPKQITEIKDFLVLARRKDAKIVKIKKNSLNVKFKVRCSRYLFTLVVNDKDKAEKLKQSLPPGIQVIEL 69          
BLAST of CX289282 vs. ExPASy Swiss-Prot
Match: RL38_DROYA (60S ribosomal protein L38 OS=Drosophila yakuba GN=RpL38 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.888e-19
Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = 3
Query:   42 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 248
            MP++I E+KDFL  ARR DAR+VKIK++    KFK+RCS++LYTL V D EKADK+KQSLPPGL V+++
Sbjct:    1 MPREIKEVKDFLNKARRSDARAVKIKKNPTNTKFKIRCSRFLYTLVVQDKEKADKIKQSLPPGLQVKEV 69          
BLAST of CX289282 vs. ExPASy Swiss-Prot
Match: RL38_DROME (60S ribosomal protein L38 OS=Drosophila melanogaster GN=RpL38 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.888e-19
Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = 3
Query:   42 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 248
            MP++I E+KDFL  ARR DAR+VKIK++    KFK+RCS++LYTL V D EKADK+KQSLPPGL V+++
Sbjct:    1 MPREIKEVKDFLNKARRSDARAVKIKKNPTNTKFKIRCSRFLYTLVVQDKEKADKIKQSLPPGLQVKEV 69          
BLAST of CX289282 vs. ExPASy Swiss-Prot
Match: RL38A_SCHPO (60S ribosomal protein L38-1 OS=Schizosaccharomyces pombe GN=rpl38a PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.752e-16
Identity = 43/70 (61.43%), Postives = 57/70 (81.43%), Query Frame = 3
Query:   42 MPKQIHEIKDFLLTARRKDARSVKIKRSRDV-VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 248
            MP+QI +IK FL  ARRKDA S +IK++ +  VKFK+RCSKYLYTL V D++KA+KL+QSLPP L+V ++
Sbjct:    1 MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQSLPPDLTVTEV 70          
BLAST of CX289282 vs. ExPASy Swiss-Prot
Match: RL38_NEUCR (60S ribosomal protein L38 OS=Neurospora crassa GN=rpl-38 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.615e-15
Identity = 38/71 (53.52%), Postives = 54/71 (76.06%), Query Frame = 3
Query:   42 MPKQIHEIKDFLLTARRKDARSVKIKRSRDV--VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 248
            MP++I +IK F+   RRKDA + +IK+++    +KFKVRC KYLYTL + DS+KA+KLK SLPP L++ D+
Sbjct:    1 MPQEIGDIKKFIEICRRKDASAARIKKNKATQQIKFKVRCQKYLYTLVLKDSDKAEKLKASLPPSLTIADV 71          
BLAST of CX289282 vs. ExPASy Swiss-Prot
Match: RL38_DICDI (60S ribosomal protein L38 OS=Dictyostelium discoideum GN=rpl38 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.615e-15
Identity = 37/65 (56.92%), Postives = 51/65 (78.46%), Query Frame = 3
Query:   42 MPKQIHEIKDFLLTARRKDARSVKIKR-SRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL 233
            MP++I EIKDFL+T R KDA+ ++IK+  +++ KFKVRC +YLYTL V D+ KA KL Q+LPP +
Sbjct:    1 MPREIREIKDFLVTVRNKDAKEIRIKKVGKNLTKFKVRCGRYLYTLRVADNAKAAKLMQTLPPSI 65          
BLAST of CX289282 vs. ExPASy Swiss-Prot
Match: RL38B_SCHPO (60S ribosomal protein L38-2 OS=Schizosaccharomyces pombe GN=rpl38b PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.256e-14
Identity = 38/70 (54.29%), Postives = 56/70 (80.00%), Query Frame = 3
Query:   42 MPKQIHEIKDFLLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 248
            MP+Q+ +IK FL  A R DA S ++K++++  VKFK+RCS+YLYTL V D++KA+KL+QSLPP L+V ++
Sbjct:    1 MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQSLPPALTVTEV 70          
The following BLAST results are available for this feature:
BLAST of CX289282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL38_LONON1.173e-2066.6760S ribosomal protein L38 OS=Lonomia obliqua GN=Rp... [more]
RL38_ANOGA1.173e-2066.6760S ribosomal protein L38 OS=Anopheles gambiae GN=... [more]
RL38_MACHI1.531e-2066.6760S ribosomal protein L38 OS=Maconellicoccus hirsu... [more]
RL38_OSTOS9.927e-2069.5760S ribosomal protein L38 OS=Ostertagia ostertagi ... [more]
RL38_DROYA2.888e-1963.7760S ribosomal protein L38 OS=Drosophila yakuba GN=... [more]
RL38_DROME2.888e-1963.7760S ribosomal protein L38 OS=Drosophila melanogast... [more]
RL38A_SCHPO1.752e-1661.4360S ribosomal protein L38-1 OS=Schizosaccharomyces... [more]
RL38_NEUCR9.615e-1553.5260S ribosomal protein L38 OS=Neurospora crassa GN=... [more]
RL38_DICDI9.615e-1556.9260S ribosomal protein L38 OS=Dictyostelium discoid... [more]
RL38B_SCHPO1.256e-1454.2960S ribosomal protein L38-2 OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC02011C01SK IF1 Citrus clementina cDNA clone C02011C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289282 ID=CX289282; Name=CX289282; organism=Citrus clementina; type=EST; length=537bp
TAAATTCGAAAACTCGAGTGGAACAAAAACCTCGACCGAGAATGCCTAAG
CAGATACACGAGATCAAGGATTTCCTTCTTACCGCCAGAAGGAAGGATGC
ACGCTCTGTGAAAATCAAGAGAAGCAGAGATGTTGTCAAGTTCAAGGTTC
GCTGCTCTAAGTACCTTTACACCCTTTGTGTGTTCGACTCAGAGAAGGCT
GACAAGTTGAAGCAGTCTCTTCCTCCAGGTTTGAGCGTCCAAGACCTGTG
AGTGTATGCGAGCTTGTCTTAATTTACTAGGTGATGAGAGCTGCTTTTTT
ACATTTCATGCTGTTTTCTCATAGTAGAAATATTGTGTGGATTTGAGCGT
ATTTGATAATTGTTATTGTTAGAGGATGCGGATCTTTTTGCCAGTTGATT
TATGGACGTTGAAACTTGGTTTGCACAATTGCAACTTTTTGCCTACTACA
TTATCTTCAGTTTAATTTCTGGATGAAATCTTGACAAATCATTCCTCCAC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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