CX289283

Overview
NameCX289283
Unique NameCX289283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289283 vs. ExPASy Swiss-Prot
Match: PR11_PETCR (Pathogenesis-related protein A OS=Petroselinum crispum GN=PCPR1-1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.032e-20
Identity = 54/155 (34.84%), Postives = 85/155 (54.84%), Query Frame = 2
Query:   47 MGVIRVEKEVPSAVAPSRLFKALN-DTHNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKQTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFKLVEAYLLGN 508
            MGV + E E  S+V+  +LFK L  D    LP++ P  IKS + L+GDGG GT+KL++  D   +K  KQ++DA+D+   T  Y+  +GD +L   +        + + +GG   K     +   D +V E + K + ++   +FK VEAYL+ N
Sbjct:    1 MGVQKSEVETTSSVSAEKLFKGLCLDIDTLLPQVLPGAIKSSETLEGDGGVGTVKLVHLGDASPFKTMKQKVDAIDKATFTYSYSIIDGDILLGFIESINNHFTAVPNADGGCTVKSTIIFNTKGDAVVPEENIKFANDQNLTIFKAVEAYLIAN 155          
BLAST of CX289283 vs. ExPASy Swiss-Prot
Match: RNS2_PANGI (Ribonuclease 2 OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.663e-19
Identity = 56/154 (36.36%), Postives = 83/154 (53.90%), Query Frame = 2
Query:   50 GVIRVEKEVPSAVAPSRLFK-ALNDTHNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKQTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFKLVEAYLLGN 508
            GV + E +  S V   +LFK +  D    +PK  P+ IKS+ +L+G+GG GTIK +   D   +   K RIDA+DE   T  YT   GD +L + +      KI+ + +GGS        +   D ++ E + K++ +K  +LFK VEAYLL N
Sbjct:    1 GVQKTETQAISPVPAEKLFKGSFLDMDTVVPKAFPEGIKSVQVLEGNGGVGTIKNVTLGDATPFNTMKTRIDAIDEHAFTYTYTIIGGDILLDIIESIENHFKIVPT-DGGSTITQTTIYNTIGDAVIPEENIKDATDKSIQLFKAVEAYLLAN 153          
BLAST of CX289283 vs. ExPASy Swiss-Prot
Match: DAU1_DAUCA (Major allergen Dau c 1 OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.068e-17
Identity = 49/155 (31.61%), Postives = 85/155 (54.84%), Query Frame = 2
Query:   47 MGVIRVEKEVPSAVAPSRLFKALN-DTHNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKQTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFKLVEAYLLGN 508
            MG      E+ S+V+  ++F  +  D    +PK AP   KS+++ +GDGGAGT++++   +G        R DA++++ LT   T  +GD +L   +     + ++ + +GGSI K  A  H   D +V E + K ++ + + LFK +EAYL+ N
Sbjct:    1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAAPGAYKSVEV-KGDGGAGTVRIITLPEGSPITSMTVRTDAVNKEALTYDSTVIDGDILLGFIESIETHLVVVPTADGGSITKTTAIFHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN 154          
BLAST of CX289283 vs. ExPASy Swiss-Prot
Match: PR1_ASPOF (Pathogenesis-related protein 1 OS=Asparagus officinalis GN=PR1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.463e-14
Identity = 53/152 (34.87%), Postives = 70/152 (46.05%), Query Frame = 2
Query:   71 EVPSAVAPSRLFKA-LNDTHNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGG-NYKQTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFKLVEAYLLGNPNLY 520
            EV   VA  R+FKA + D HN  PKI P  I    ++ GDG  GTI+ +   +    +   K+R+D +D D   +K T  EG G+ KM + +    K   S NGG + K  A              AKE     +   K  EAYLL NP  Y
Sbjct:    9 EVAVNVAAGRMFKAAMLDWHNLGPKIVPDFIAGGSVVSGDGSVGTIREIKINNPAIPFSYVKERLDFVDHDKFEVKQTLVEGGGLGKMFECATTHFKFEPSSNGGCLVKVTASYKILPGVADESAKAKEGI---TNHMKATEAYLLANPTAY 157          
The following BLAST results are available for this feature:
BLAST of CX289283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
PR11_PETCR1.032e-2034.84Pathogenesis-related protein A OS=Petroselinum cri... [more]
RNS2_PANGI9.663e-1936.36Ribonuclease 2 OS=Panax ginseng PE=1 SV=1[more]
DAU1_DAUCA1.068e-1731.61Major allergen Dau c 1 OS=Daucus carota PE=1 SV=1[more]
PR1_ASPOF2.463e-1434.87Pathogenesis-related protein 1 OS=Asparagus offici... [more]

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Properties
Property NameValue
Genbank descriptionC02011C02SK IF1 Citrus clementina cDNA clone C02011C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289283 ID=CX289283; Name=CX289283; organism=Citrus clementina; type=EST; length=576bp
ATATTGAACATCTCTCTTTTCTCTAATTAAGCAATAGATATTTAACATGG
GTGTCATTCGCGTTGAGAAAGAGGTGCCATCGGCTGTTGCACCATCAAGA
TTGTTCAAGGCTTTAAATGACACTCACAATTTTTTGCCAAAGATCGCGCC
TCAAACAATTAAGAGCATCGATATTCTTCAAGGAGATGGAGGTGCTGGCA
CTATCAAGCTGTTGAACTTTGCTGATGGTGGTAATTACAAGCAGACGAAG
CAAAGAATTGATGCACTTGACGAGGACAATTTGACAATGAAGTACACTAC
GTATGAAGGAGATGGGATTTTGAAAATGACGGACAAAAGCGTGTACGATG
TTAAGATCATGGATTCTGGCAATGGAGGAAGCATCTGCAAGTTTGTTGCG
GAGGTCCATGCAAATGACGATAAACTGGTCAACGAAGGGCACGCAAAGGA
ATCCGAAGAAAAAGGATCGGAATTGTTCAAGCTCGTGGAAGCCTATCTCT
TGGGTAATCCTAATCTCTATGCTTAAATCAATCATCCATATGCATTGGCT
TTGCCAATTGCGAAATTTCCAGCTAG
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