CX289285

Overview
NameCX289285
Unique NameCX289285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length411
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15214 contig Ccv1_Contig15214:46..456. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_PONAB (Nascent polypeptide-associated complex subunit alpha OS=Pongo abelii GN=NACA PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQ 134          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_ORENI (Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQ 134          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_MOUSE (Nascent polypeptide-associated complex subunit alpha OS=Mus musculus GN=Naca PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQ 134          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_HUMAN (Nascent polypeptide-associated complex subunit alpha OS=Homo sapiens GN=NACA PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQ 134          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_DANRE (Nascent polypeptide-associated complex subunit alpha OS=Danio rerio GN=naca PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q
Sbjct:   79 AMSKLGLRQVAGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQ 134          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_CHILA (Nascent polypeptide-associated complex subunit alpha OS=Chinchilla lanigera PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQ 134          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_BOVIN (Nascent polypeptide-associated complex subunit alpha OS=Bos taurus GN=NACA PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQ 134          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACAM_MOUSE (Nascent polypeptide-associated complex subunit alpha, muscle-specific form OS=Mus musculus GN=Naca PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q
Sbjct: 2051 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQ 2106          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_DROME (Nascent polypeptide-associated complex subunit alpha OS=Drosophila melanogaster GN=Nacalpha PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.849e-18
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 1
Query:  247 MLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            MLKLG+K I GV+RVT++KSKNILFVI+ PDV+K+P SDTYIVFGEAKIEDLS Q
Sbjct:   80 MLKLGLKQIQGVNRVTIRKSKNILFVINNPDVYKNPHSDTYIVFGEAKIEDLSQQ 134          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACP1_HUMAN (Putative nascent polypeptide-associated complex subunit alpha-like protein OS=Homo sapiens GN=NACAP1 PE=5 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.143e-17
Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            A  KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTY+VFGEAKIEDLS +
Sbjct:   78 ARFKLGLQQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYMVFGEAKIEDLSQE 133          
The following BLAST results are available for this feature:
BLAST of CX289285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
NACA_PONAB1.666e-1876.79Nascent polypeptide-associated complex subunit alp... [more]
NACA_ORENI1.666e-1876.79Nascent polypeptide-associated complex subunit alp... [more]
NACA_MOUSE1.666e-1876.79Nascent polypeptide-associated complex subunit alp... [more]
NACA_HUMAN1.666e-1876.79Nascent polypeptide-associated complex subunit alp... [more]
NACA_DANRE1.666e-1876.79Nascent polypeptide-associated complex subunit alp... [more]
NACA_CHILA1.666e-1876.79Nascent polypeptide-associated complex subunit alp... [more]
NACA_BOVIN1.666e-1876.79Nascent polypeptide-associated complex subunit alp... [more]
NACAM_MOUSE1.666e-1876.79Nascent polypeptide-associated complex subunit alp... [more]
NACA_DROME4.849e-1878.18Nascent polypeptide-associated complex subunit alp... [more]
NACP1_HUMAN3.143e-1771.43Putative nascent polypeptide-associated complex su... [more]

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Properties
Property NameValue
Genbank descriptionC02011C06SK IF1 Citrus clementina cDNA clone C02011C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289285 ID=CX289285; Name=CX289285; organism=Citrus clementina; type=EST; length=411bp
TCTCGTTCTCAAGTCTCAACACCCAGCCCAAAAAAAATGACTGCTCAGTC
TCAAGAAGAGCTCCTCGCTGCCCATCTTGAAGAGCAAAAGCTCAACCCCG
ATGAGCCTGTAGTTGAGGACGACGATGATGAGGATGATGATGAGGAGGAT
GAGGATGATGACAAGGATGAAGACGATGTGGAAGGGAAAGGAGATGGAAG
TGGTCGCTCAAAACAGAGCAGGAGTGAAAAGAAGAGTCGGAAAGCAATGT
TGAAACTTGGAATGAAGCCAATCCCTGGTGTCAGTCGAGTTACAGTTAAA
AAGAGCAAAAATATTTTGTTTGTTATCTCCAAACCAGATGTTTTCAAGAG
TCCTACATCTGACACATACATTGTCTTTGGGGAAGCAAAGATCGAGGATC
TGAGTTCACAA
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