CX289285

Overview
NameCX289285
Unique NameCX289285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length411
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15214 contig Ccv1_Contig15214:46..456. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_CAEEL (Nascent polypeptide-associated complex subunit alpha OS=Caenorhabditis elegans GN=Y65B4BR.5 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.144e-17
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 1
Query:  253 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLS 405
            KLG+K + GVSRV ++KSKNILFVI+KPDVFKSP SDTYI+FGEAKIEDL+
Sbjct:   68 KLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDTYIIFGEAKIEDLT 118          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_CAEBR (Nascent polypeptide-associated complex subunit alpha OS=Caenorhabditis briggsae GN=CBG05114 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.144e-17
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 1
Query:  253 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLS 405
            KLG+K + GVSRV ++KSKNILFVI+KPDVFKSP SDTYI+FGEAKIEDL+
Sbjct:   70 KLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDTYIIFGEAKIEDLT 120          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_ASPCL (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus clavatus GN=egd2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.661e-16
Identity = 37/56 (66.07%), Postives = 53/56 (94.64%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            A+ KLG+K +PG++RVT+++ KNILFVI++PDV++SPTS+T+I+FGEAKIEDL+SQ
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPTSNTWIIFGEAKIEDLNSQ 110          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_BOTFB (Nascent polypeptide-associated complex subunit alpha OS=Botryotinia fuckeliana (strain B05.10) GN=egd2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.475e-16
Identity = 37/56 (66.07%), Postives = 52/56 (92.86%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            ++ KLG+  +PG++RVT+++ KNILFVI++P+V+KSPTS+TYIVFGEAKIEDL+SQ
Sbjct:   60 SIAKLGLTRVPGITRVTLRRPKNILFVINQPEVYKSPTSNTYIVFGEAKIEDLNSQ 115          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_SCLS1 (Nascent polypeptide-associated complex subunit alpha OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=egd2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.538e-16
Identity = 37/56 (66.07%), Postives = 51/56 (91.07%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            ++ KLG+  +PG++RVT+++ KNILFVI+ P+V+KSPTS+TYIVFGEAKIEDL+SQ
Sbjct:   61 SIAKLGLTRVPGITRVTLRRPKNILFVINNPEVYKSPTSNTYIVFGEAKIEDLNSQ 116          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_NEOFI (Nascent polypeptide-associated complex subunit alpha OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=egd2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.741e-16
Identity = 36/56 (64.29%), Postives = 53/56 (94.64%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            A+ KLG+K +PG++RVT+++ KNILFVI++PDV++SP+S+T+I+FGEAKIEDL+SQ
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIEDLNSQ 110          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_EMENI (Nascent polypeptide-associated complex subunit alpha OS=Emericella nidulans GN=egd2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.741e-16
Identity = 36/56 (64.29%), Postives = 53/56 (94.64%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            A+ KLG+K +PG++RVT+++ KNILFVI++PDV++SP+S+T+I+FGEAKIEDL+SQ
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIEDLNSQ 110          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_COCIM (Nascent polypeptide-associated complex subunit alpha OS=Coccidioides immitis GN=EGD2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.741e-16
Identity = 36/56 (64.29%), Postives = 53/56 (94.64%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            A+ KLG+K +PG++RVT+++ KNILFVI++PDV++SP+S+T+I+FGEAKIEDL+SQ
Sbjct:   57 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIEDLNSQ 112          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_ASPOR (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus oryzae GN=egd2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.741e-16
Identity = 36/56 (64.29%), Postives = 53/56 (94.64%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            A+ KLG+K +PG++RVT+++ KNILFVI++PDV++SP+S+T+I+FGEAKIEDL+SQ
Sbjct:   54 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIEDLNSQ 109          
BLAST of CX289285 vs. ExPASy Swiss-Prot
Match: NACA_ASPFU (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus fumigatus GN=egd2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.741e-16
Identity = 36/56 (64.29%), Postives = 53/56 (94.64%), Query Frame = 1
Query:  244 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 411
            A+ KLG+K +PG++RVT+++ KNILFVI++PDV++SP+S+T+I+FGEAKIEDL+SQ
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIEDLNSQ 110          
The following BLAST results are available for this feature:
BLAST of CX289285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
NACA_CAEEL9.144e-1778.43Nascent polypeptide-associated complex subunit alp... [more]
NACA_CAEBR9.144e-1778.43Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASPCL2.661e-1666.07Nascent polypeptide-associated complex subunit alp... [more]
NACA_BOTFB3.475e-1666.07Nascent polypeptide-associated complex subunit alp... [more]
NACA_SCLS14.538e-1666.07Nascent polypeptide-associated complex subunit alp... [more]
NACA_NEOFI7.741e-1664.29Nascent polypeptide-associated complex subunit alp... [more]
NACA_EMENI7.741e-1664.29Nascent polypeptide-associated complex subunit alp... [more]
NACA_COCIM7.741e-1664.29Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASPOR7.741e-1664.29Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASPFU7.741e-1664.29Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionC02011C06SK IF1 Citrus clementina cDNA clone C02011C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289285 ID=CX289285; Name=CX289285; organism=Citrus clementina; type=EST; length=411bp
TCTCGTTCTCAAGTCTCAACACCCAGCCCAAAAAAAATGACTGCTCAGTC
TCAAGAAGAGCTCCTCGCTGCCCATCTTGAAGAGCAAAAGCTCAACCCCG
ATGAGCCTGTAGTTGAGGACGACGATGATGAGGATGATGATGAGGAGGAT
GAGGATGATGACAAGGATGAAGACGATGTGGAAGGGAAAGGAGATGGAAG
TGGTCGCTCAAAACAGAGCAGGAGTGAAAAGAAGAGTCGGAAAGCAATGT
TGAAACTTGGAATGAAGCCAATCCCTGGTGTCAGTCGAGTTACAGTTAAA
AAGAGCAAAAATATTTTGTTTGTTATCTCCAAACCAGATGTTTTCAAGAG
TCCTACATCTGACACATACATTGTCTTTGGGGAAGCAAAGATCGAGGATC
TGAGTTCACAA
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