CX289293

Overview
NameCX289293
Unique NameCX289293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PP135_ARATH (Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.471e-18
Identity = 54/142 (38.03%), Postives = 84/142 (59.15%), Query Frame = 3
Query:    3 KMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDL 428
            KMK++G  LS  T + ++ L+ +  + +K+ DVL  M+ +NI P   +Y+I I+  GA +D+ GME IL  M+ +  + LD+ T A  A  Y  A L DKA  VLK+ E    + +   +  L+S+YASLG + EV R+W +
Sbjct:  254 KMKDLGFPLSGFTCDQMLLLHKRIDR-KKIADVLLLMEKENIKPSLLTYKILIDVKGATNDISGMEQILETMKDEG-VELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLSIYASLGREDEVKRIWKI 393          
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PPR44_ARATH (Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 49/142 (34.51%), Postives = 83/142 (58.45%), Query Frame = 3
Query:    3 KMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDL 428
            KMK++G  LST T N ++ LY +  + +K+ DVL  ++ +N+ P+  +Y+I I++ G+ +D+ GME I+  M+S+  + LD    A  A  Y  A L +KA  VLK+ E    +++      L+S+Y  L  + EV R+W +
Sbjct:  252 KMKDLGFPLSTFTCNQMLILYKRVDK-KKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQIVETMKSE-GVELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKDLLSVYGYLQREDEVRRVWKI 391          
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PP234_ARATH (Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = 3
Query:    3 KMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRL 419
            KMKE+    S    N ++ LYS   + +K+ DVL  M+ +NI P   +Y   INS G   D+ GME I+  ++ +  I LD    +  A +YI+A L ++A D++K+ E +  Q+       L+ LYA +G+   V RL
Sbjct:  267 KMKELKFPTSVFACNQLLLLYSMHDR-KKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKIVETIKEE-GIELDPELQSILAKYYIRAGLKERAQDLMKEIEGKGLQQTPWVCRSLLPLYADIGDSDNVRRL 403          
The following BLAST results are available for this feature:
BLAST of CX289293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PP135_ARATH1.471e-1838.03Pentatricopeptide repeat-containing protein At1g80... [more]
PPR44_ARATH1.988e-1534.51Pentatricopeptide repeat-containing protein At1g15... [more]
PP234_ARATH1.861e-1334.53Pentatricopeptide repeat-containing protein At3g15... [more]

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Properties
Property NameValue
Genbank descriptionC02011D05SK IF1 Citrus clementina cDNA clone C02011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289293 ID=CX289293; Name=CX289293; organism=Citrus clementina; type=EST; length=488bp
GGAAAATGAAGGAGATGGGGATTGCATTATCAACTCTAACTTACAATGAC
ATCATGTGCCTCTACTCAAAAACTGGTCAGTATGAGAAGGTTCCCGATGT
GCTAACCGAGATGAAGGCAAAAAATATCTTCCCTGACAACTTCAGCTACA
GAATCTGCATCAATTCCTATGGTGCAAGATCTGATCTTGAGGGGATGGAA
ATTATCTTAAGAGAAATGGAGAGCCAACCTCACATTGTTTTGGACTGGAG
CACATATGCCTCTGCTGCCCATTTTTACATAAAAGCTAACCTTATTGATA
AAGCATCAGATGTTTTGAAGAAAGCAGAAGAGAGACTTGAGCAGAAAGAT
GGGATTGGCTATAACTTTTTGATATCACTCTATGCTAGTTTAGGGAATAA
GTCTGAGGTCCTGAGATTGTGGGATTTAGAGAAAACAGCTTGTAAGAGGT
ATATCAACAGGGACTACATCACCATGCTGGAAGCTTTG
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