CX289294

Overview
NameCX289294
Unique NameCX289294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.592e-23
Identity = 47/68 (69.12%), Postives = 56/68 (82.35%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 205
            DLKRG  +D E++L+I LHS LGN+WS IA RLPGRTDNEIKN+WNTHI++KLL  GIDP TH PL +
Sbjct:   64 DLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLKK 131          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.874e-21
Identity = 43/66 (65.15%), Postives = 56/66 (84.85%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPL 199
            DLKRG F+ +E+ LII+LH+ LGN+WS IA RLPGRTDNEIKN+WN+ +++KL  +GIDP TH+PL
Sbjct:   64 DLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKGIDPTTHKPL 129          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.000e-20
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLN 166
            DLKRGN T EE+EL++KLHS LGN+WSLIAG LPGRTDNEIKNYWN+H+ RKL N
Sbjct:   64 DLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWNSHLSRKLHN 118          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.412e-20
Identity = 41/68 (60.29%), Postives = 56/68 (82.35%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNE 205
            DLKRG F++ E+ LI+ LH+ LGN+WS IA +LPGRTDNEIKNYWNT ++++L ++G+DP TH PL +
Sbjct:   64 DLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRSQGLDPNTHLPLED 131          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 4.456e-20
Identity = 41/66 (62.12%), Postives = 55/66 (83.33%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPL 199
            DLKRG F+ +E++ I+ LH +LGN+WS IA  LPGRTDNEIKN+WN+ I++KL  +GIDPATH+P+
Sbjct:   66 DLKRGCFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQQGIDPATHKPM 131          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.888e-19
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNR 169
            DLKRGNFTDEE+E II+LH LLGNKWS IA  LPGRTDNEIKN WNTH+++K+  R
Sbjct:   66 DLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKKVAQR 121          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.872e-18
Identity = 37/53 (69.81%), Postives = 50/53 (94.34%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 160
            ++KRGNFT++E++LII+LH LLGN+WSLIA R+PGRTDN++KNYWNTH+ +KL
Sbjct:   68 NVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 120          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.445e-18
Identity = 37/53 (69.81%), Postives = 49/53 (92.45%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 160
            ++ RGNFTD+E++LII+LH LLGN+WSLIA R+PGRTDN++KNYWNTH+ +KL
Sbjct:   64 NVNRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKL 116          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.445e-18
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRP 196
            DLK+G  T+ E+  II+LH+ LGN+WS IA  +PGRTDNEIKNYWNTHI++KL   GIDP  H+P
Sbjct:   64 DLKKGPLTEMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNYWNTHIKKKLKLLGIDPNNHQP 128          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.291e-18
Identity = 37/52 (71.15%), Postives = 50/52 (96.15%), Query Frame = 2
Query:    5 LKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 160
            +KRGN + +E+ELII+LH+LLGN+WSLIAGRLPGRTDNEIKN+WN+++R++L
Sbjct:   67 IKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKRL 118          
The following BLAST results are available for this feature:
BLAST of CX289294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ODO1_PETHY9.592e-2369.12Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]
MYB86_ARATH6.874e-2165.15Transcription factor MYB86 OS=Arabidopsis thaliana... [more]
MYB12_ARATH2.000e-2078.18Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
MYB2_PHYPA3.412e-2060.29Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
MYB3_HORVU4.456e-2062.12Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]
MYB1_MAIZE2.888e-1975.00Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
WER_ARATH1.872e-1869.81Transcription factor WER OS=Arabidopsis thaliana G... [more]
MYB23_ARATH2.445e-1869.81Transcription factor MYB23 OS=Arabidopsis thaliana... [more]
MYB15_ANTMA2.445e-1863.08Myb-related protein 315 OS=Antirrhinum majus GN=MY... [more]
TT2_ARATH9.291e-1871.15Transcription factor TT2 OS=Arabidopsis thaliana G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02011D06SK IF1 Citrus clementina cDNA clone C02011D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289294 ID=CX289294; Name=CX289294; organism=Citrus clementina; type=EST; length=536bp
CGACTTAAAGCGCGGTAATTTTACTGATGAAGAAGATGAACTCATTATCA
AACTCCATAGCCTCCTTGGTAACAAGTGGTCATTGATAGCCGGGAGGTTA
CCAGGAAGAACAGACAATGAGATAAAGAATTACTGGAACACACACATAAG
AAGGAAGCTTCTGAACAGAGGGATTGATCCTGCGACACACAGGCCACTCA
ATGAGCCAGCAGTACCTGTAGCAGCAGCTCAAAGTGCTACAACTGCTGCT
CCTGCTGATGTGGCGGCAGCGGCAGCGGCAGCAGCAGCAGCAACAACAAC
AACAATATCATTTTCGGCAGCAGCTGCAAAGGAGGATATAAAACGAGAGA
AAAGGACAATTGGGTTTGTTTGCAAAAATGAGAAACAGCCGTATCATCAT
CACAATCATCATCGTCATCAGCAGCAGCAAGTGATCGTCAAAGAAGAAGA
AGTGACGTGTCCAGACTTGAACCTTGAGCTCAGAATCAGCCCTCCATCAT
CTGCTGATCTTCATCAGCAGCAGCCATTGATTAAAA
back to top