CX289294

Overview
NameCX289294
Unique NameCX289294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.213e-17
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNR---------GIDPATHRPL 199
            ++KRG+ + +E +LII++H LLGN+WSLIAGRLPGRTDNE+KNYWNTH+ +K  +R         G  P T +P+
Sbjct:   64 NIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKPNSRRQNAPESIVGATPFTDKPV 138          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.213e-17
Identity = 35/54 (64.81%), Postives = 50/54 (92.59%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLL 163
            ++ +GNFT++E++LII+LH LLGN+WSLIA R+PGRTDN++KNYWNTH+ +KL+
Sbjct:   66 NVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLV 119          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.213e-17
Identity = 35/54 (64.81%), Postives = 50/54 (92.59%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLL 163
            ++ +GNFT++E++LII+LH LLGN+WSLIA R+PGRTDN++KNYWNTH+ +KL+
Sbjct:   66 NVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLV 119          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.531e-17
Identity = 36/53 (67.92%), Postives = 47/53 (88.68%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 160
            D+KRGN + EE+++IIKLH+ LGN+WSLIA  LPGRTDNEIKNYWN+H+ R++
Sbjct:   64 DVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQI 116          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.027e-16
Identity = 36/53 (67.92%), Postives = 46/53 (86.79%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 160
            D+KRGNF+ EE++ II LH LLGN+WS IA RLPGRTDNEIKN W+TH++++L
Sbjct:   64 DIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 35/52 (67.31%), Postives = 47/52 (90.38%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRK 157
            +++RGN + +E++LII+LH LLGN+WSLIAGRLPGRTDNEIKNYWN+ + R+
Sbjct:   64 NIRRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSTLGRR 115          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 35/53 (66.04%), Postives = 47/53 (88.68%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 160
            DLKRG F+ +E++LII+ HS+LGN+WS IA RLPGRTDNEIKN+WN+ I+++L
Sbjct:   70 DLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 122          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MY114_ARATH (Transcription factor MYB114 OS=Arabidopsis thaliana GN=MYB114 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 33/51 (64.71%), Postives = 45/51 (88.24%), Query Frame = 2
Query:    5 LKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRK 157
            +KRG F+ +E +L+++LH LLGN+WSLIAGRLPGRT N++KNYWNTH+ +K
Sbjct:   61 IKRGKFSSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.530e-15
Identity = 32/51 (62.75%), Postives = 45/51 (88.24%), Query Frame = 2
Query:    5 LKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRK 157
            +KRG  +++E +L+++LH LLGN+WSLIAGRLPGRT N++KNYWNTH+ +K
Sbjct:   61 IKRGRLSNDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB75_ARATH (Transcription factor MYB75 OS=Arabidopsis thaliana GN=MYB75 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.316e-15
Identity = 32/51 (62.75%), Postives = 44/51 (86.27%), Query Frame = 2
Query:    5 LKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRK 157
            +KRG  + +E +L+++LH LLGN+WSLIAGRLPGRT N++KNYWNTH+ +K
Sbjct:   61 IKRGKLSSDEVDLLLRLHRLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
The following BLAST results are available for this feature:
BLAST of CX289294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
MYB82_ARATH1.213e-1753.33Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
GL1_ARATH1.213e-1764.81Trichome differentiation protein GL1 OS=Arabidopsi... [more]
GL1_ARALY1.213e-1764.81Trichome differentiation protein GL1 OS=Arabidopsi... [more]
MYBP_MAIZE3.531e-1767.92Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB4_ORYSJ1.027e-1667.92Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
MYBC_MAIZE6.658e-1667.31Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
MYB46_ARATH6.658e-1666.04Transcription factor MYB46 OS=Arabidopsis thaliana... [more]
MY114_ARATH6.658e-1664.71Transcription factor MYB114 OS=Arabidopsis thalian... [more]
MYB90_ARATH2.530e-1562.75Transcription factor MYB90 OS=Arabidopsis thaliana... [more]
MYB75_ARATH4.316e-1562.75Transcription factor MYB75 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC02011D06SK IF1 Citrus clementina cDNA clone C02011D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289294 ID=CX289294; Name=CX289294; organism=Citrus clementina; type=EST; length=536bp
CGACTTAAAGCGCGGTAATTTTACTGATGAAGAAGATGAACTCATTATCA
AACTCCATAGCCTCCTTGGTAACAAGTGGTCATTGATAGCCGGGAGGTTA
CCAGGAAGAACAGACAATGAGATAAAGAATTACTGGAACACACACATAAG
AAGGAAGCTTCTGAACAGAGGGATTGATCCTGCGACACACAGGCCACTCA
ATGAGCCAGCAGTACCTGTAGCAGCAGCTCAAAGTGCTACAACTGCTGCT
CCTGCTGATGTGGCGGCAGCGGCAGCGGCAGCAGCAGCAGCAACAACAAC
AACAATATCATTTTCGGCAGCAGCTGCAAAGGAGGATATAAAACGAGAGA
AAAGGACAATTGGGTTTGTTTGCAAAAATGAGAAACAGCCGTATCATCAT
CACAATCATCATCGTCATCAGCAGCAGCAAGTGATCGTCAAAGAAGAAGA
AGTGACGTGTCCAGACTTGAACCTTGAGCTCAGAATCAGCCCTCCATCAT
CTGCTGATCTTCATCAGCAGCAGCCATTGATTAAAA
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