CX289294

Overview
NameCX289294
Unique NameCX289294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289294_ssr278 microsatellite CX289294_ssr278:278..292. BLAST: Citrus ESTs to Prunus persica proteins V1
CX289294_ssr293 microsatellite CX289294_ssr293:293..304. BLAST: Citrus ESTs to Prunus persica proteins V1
CX289294_ssr441 microsatellite CX289294_ssr441:441..452. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13688 contig Ccv1_Contig13688:463..998. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.316e-15
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 2
Query:    5 LKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRK 157
            +KRG    +E +L+++LH LLGN+WSLIAGRLPGRT N++KNYWNTH+ +K
Sbjct:   61 IKRGKLCSDEVDLVLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.637e-15
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRR 154
            +LK+G FT EE+ LII+LHS +GNKW+ +A  LPGRTDNEIKNYWNT I+R
Sbjct:   92 NLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.637e-15
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRR 154
            +LK+G FT EE+ LII+LHS +GNKW+ +A  LPGRTDNEIKNYWNT I+R
Sbjct:   92 NLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.362e-15
Identity = 32/62 (51.61%), Postives = 49/62 (79.03%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPAT 187
            ++K G+F++EED +I  L + +G++WS+IA  LPGRTDN+IKNYWNT +R+KLL+   D ++
Sbjct:   65 NIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKLLSSSSDSSS 126          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.640e-14
Identity = 32/52 (61.54%), Postives = 45/52 (86.54%), Query Frame = 2
Query:    5 LKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 160
            +KRG+FT+ E+++II L +LLGN+W+ IA  LP RTDN+IKNYWNTH+++KL
Sbjct:   65 IKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKL 116          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.654e-14
Identity = 29/56 (51.79%), Postives = 47/56 (83.93%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNR 169
            ++K G F++EE+ +I  L+  +G++WS+IA +LPGRTDN+IKNYWNT +++KL+N+
Sbjct:   65 NIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLINK 120          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.654e-14
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 2
Query:    5 LKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNR 169
            LKRG  +  E+ LI++LH+  GN+WS IA RLPGRTDNEIKNYW TH+R+K   R
Sbjct:   61 LKRGRMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQER 115          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.654e-14
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 2
Query:    5 LKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRK 157
            LKRG  T +E+ L+++LH+  GN+WS IA +LPGRTDNEIKNYW TH+R+K
Sbjct:   61 LKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKK 111          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.654e-14
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 2
Query:    5 LKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRK 157
            LKRG  T +E+ L+++LH+  GN+WS IA +LPGRTDNEIKNYW TH+R+K
Sbjct:   60 LKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKK 110          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.232e-14
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 2
Query:    5 LKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNR 169
            LK G  + +E+ LII+LH+  GN+WS IA RLPGRTDNEIKNYW TH+R+K   R
Sbjct:   61 LKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQER 115          
The following BLAST results are available for this feature:
BLAST of CX289294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
MY113_ARATH4.316e-1562.75Transcription factor MYB113 OS=Arabidopsis thalian... [more]
GAM1_ORYSJ5.637e-1568.63Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GAM1_ORYSI5.637e-1568.63Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
RAX1_ARATH7.362e-1551.61Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]
MYB06_ANTMA1.640e-1461.54Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
RAX3_ARATH3.654e-1451.79Transcription factor RAX3 OS=Arabidopsis thaliana ... [more]
MYBA2_ORYSJ3.654e-1461.82Myb-related protein MYBAS2 OS=Oryza sativa subsp. ... [more]
MYB59_ARATH3.654e-1462.75Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYB48_ARATH3.654e-1462.75Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYBA1_ORYSJ6.232e-1461.82Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionC02011D06SK IF1 Citrus clementina cDNA clone C02011D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289294 ID=CX289294; Name=CX289294; organism=Citrus clementina; type=EST; length=536bp
CGACTTAAAGCGCGGTAATTTTACTGATGAAGAAGATGAACTCATTATCA
AACTCCATAGCCTCCTTGGTAACAAGTGGTCATTGATAGCCGGGAGGTTA
CCAGGAAGAACAGACAATGAGATAAAGAATTACTGGAACACACACATAAG
AAGGAAGCTTCTGAACAGAGGGATTGATCCTGCGACACACAGGCCACTCA
ATGAGCCAGCAGTACCTGTAGCAGCAGCTCAAAGTGCTACAACTGCTGCT
CCTGCTGATGTGGCGGCAGCGGCAGCGGCAGCAGCAGCAGCAACAACAAC
AACAATATCATTTTCGGCAGCAGCTGCAAAGGAGGATATAAAACGAGAGA
AAAGGACAATTGGGTTTGTTTGCAAAAATGAGAAACAGCCGTATCATCAT
CACAATCATCATCGTCATCAGCAGCAGCAAGTGATCGTCAAAGAAGAAGA
AGTGACGTGTCCAGACTTGAACCTTGAGCTCAGAATCAGCCCTCCATCAT
CTGCTGATCTTCATCAGCAGCAGCCATTGATTAAAA
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