CX289294

Overview
NameCX289294
Unique NameCX289294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MY104_ARATH (Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.040e-13
Identity = 32/57 (56.14%), Postives = 45/57 (78.95%), Query Frame = 2
Query:    5 LKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGI 175
            LK+G FTDEE++ +++LH++LGNKWS +A   PGRTDNEIKN+WN   R +L  +G+
Sbjct:   69 LKKGPFTDEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFWNAR-RMRLKGKGL 124          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.276e-13
Identity = 30/63 (47.62%), Postives = 46/63 (73.02%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATH 190
            +++ G+FT+EED +I  L + +G++WS+IA  L GRTDN+IKNYWNT +++KL+     P  H
Sbjct:   65 NIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKLIATMAPPPHH 127          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.999e-13
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 160
            D++RGN T EE  LI++LH+  GN+WS IA  LPGRTDNEIKNYW T I++ +
Sbjct:   65 DVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQKHM 117          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: LAF1_ARATH (Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.999e-13
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 2
Query:    5 LKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLL 163
            LKR   + EE+E I+  HS LGNKWS IA  LPGRTDNEIKNYW++H+++K L
Sbjct:   63 LKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKKWL 115          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.420e-12
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWN-THIRRKL 160
            D++RGN T EE  LI++LH+  GN+WS IA  LPGRTDNEIKNYWN T I++ +
Sbjct:   65 DVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQKHI 118          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.466e-12
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRR 154
            D++RGN T EE  +I++LH+  GN+WS IA  LPGRTDNEIKN+W T I++
Sbjct:   72 DVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 122          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 9.950e-12
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRG 172
            ++K+ ++T+EED +I + H  LGN+W+ IA  LPGRTDN IKN+WN+ +RRK+   G
Sbjct:  136 EVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQEG 192          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 9.950e-12
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRG 172
            ++K+ ++T+EED +I + H  LGN+W+ IA  LPGRTDN IKN+WN+ +RRK+   G
Sbjct:  136 EVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQEG 192          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.299e-11
Identity = 28/57 (49.12%), Postives = 44/57 (77.19%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRG 172
            ++K+ ++T+EED +I + H +LGN+W+ IA  LPGRTDN +KN+WN+ I+RK+   G
Sbjct:  132 EVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVETGG 188          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYBB_CHICK (Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.299e-11
Identity = 27/53 (50.94%), Postives = 43/53 (81.13%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 160
            ++K+ ++T+EED +I + H +LGN+W+ IA  LPGRTDN +KN+WN+ I+RK+
Sbjct:  132 EVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 184          
The following BLAST results are available for this feature:
BLAST of CX289294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
MY104_ARATH4.040e-1356.14Transcription factor MYB104 OS=Arabidopsis thalian... [more]
RAX2_ARATH5.276e-1347.62Transcription factor RAX2 OS=Arabidopsis thaliana ... [more]
MYB05_ANTMA8.999e-1360.38Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
LAF1_ARATH8.999e-1362.26Transcription factor LAF1 OS=Arabidopsis thaliana ... [more]
MYB40_ANTMA3.420e-1261.11Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MYB21_ARATH4.466e-1258.82Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MYBA_MOUSE9.950e-1250.88Myb-related protein A OS=Mus musculus GN=Mybl1 PE=... [more]
MYBA_HUMAN9.950e-1250.88Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=... [more]
MYBB_XENLA1.299e-1149.12Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]
MYBB_CHICK1.299e-1150.94Myb-related protein B OS=Gallus gallus GN=MYBL2 PE... [more]

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Properties
Property NameValue
Genbank descriptionC02011D06SK IF1 Citrus clementina cDNA clone C02011D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289294 ID=CX289294; Name=CX289294; organism=Citrus clementina; type=EST; length=536bp
CGACTTAAAGCGCGGTAATTTTACTGATGAAGAAGATGAACTCATTATCA
AACTCCATAGCCTCCTTGGTAACAAGTGGTCATTGATAGCCGGGAGGTTA
CCAGGAAGAACAGACAATGAGATAAAGAATTACTGGAACACACACATAAG
AAGGAAGCTTCTGAACAGAGGGATTGATCCTGCGACACACAGGCCACTCA
ATGAGCCAGCAGTACCTGTAGCAGCAGCTCAAAGTGCTACAACTGCTGCT
CCTGCTGATGTGGCGGCAGCGGCAGCGGCAGCAGCAGCAGCAACAACAAC
AACAATATCATTTTCGGCAGCAGCTGCAAAGGAGGATATAAAACGAGAGA
AAAGGACAATTGGGTTTGTTTGCAAAAATGAGAAACAGCCGTATCATCAT
CACAATCATCATCGTCATCAGCAGCAGCAAGTGATCGTCAAAGAAGAAGA
AGTGACGTGTCCAGACTTGAACCTTGAGCTCAGAATCAGCCCTCCATCAT
CTGCTGATCTTCATCAGCAGCAGCCATTGATTAAAA
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