CX289294

Overview
NameCX289294
Unique NameCX289294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYBA_XENLA (Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRG 172
            D+K+ ++T+EED +I   H  +GN+W+ IA  LPGRTDN IKN+WN+ ++RK+   G
Sbjct:  135 DVKKSSWTEEEDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRKVEQEG 191          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB_MOUSE (Myb proto-oncogene protein OS=Mus musculus GN=Myb PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.217e-11
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRG 172
            ++K+ ++T+EED +I + H  LGN+W+ IA  LPGRTDN IKN+WN+ +RRK+   G
Sbjct:  141 EVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEG 197          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB_HUMAN (Myb proto-oncogene protein OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.217e-11
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRG 172
            ++K+ ++T+EED +I + H  LGN+W+ IA  LPGRTDN IKN+WN+ +RRK+   G
Sbjct:  141 EVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEG 197          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB_CHICK (Myb proto-oncogene protein OS=Gallus gallus GN=MYB PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.217e-11
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRG 172
            ++K+ ++T+EED +I + H  LGN+W+ IA  LPGRTDN IKN+WN+ +RRK+   G
Sbjct:  141 EVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEG 197          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB_BOVIN (Myb proto-oncogene protein OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.217e-11
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRG 172
            ++K+ ++T+EED +I + H  LGN+W+ IA  LPGRTDN IKN+WN+ +RRK+   G
Sbjct:  141 EVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEG 197          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYBB_MOUSE (Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.217e-11
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHR 193
            ++K+  +T+EED +I + H +LGN+W+ IA  LPGRTDN +KN+WN+ I+RK+   G  PA  R
Sbjct:  132 EVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGF-PAESR 194          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB_AVIMB (Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.895e-11
Identity = 28/57 (49.12%), Postives = 43/57 (75.44%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRG 172
            ++K+ ++T+EED +I + H  LGN+W+ IA  LPGRTDN +KN+WN+ +RRK+   G
Sbjct:   70 EVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKVEQEG 126          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB_DROME (Myb protein OS=Drosophila melanogaster GN=Myb PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.781e-11
Identity = 29/52 (55.77%), Postives = 42/52 (80.77%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRK 157
            ++K+  +T++EDE+I + H  LGN+W+ IA RLPGRTDN IKN+WN+ +RRK
Sbjct:  185 NIKKTAWTEKEDEIIYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRK 236          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYBB_HUMAN (Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.781e-11
Identity = 27/53 (50.94%), Postives = 42/53 (79.25%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 160
            ++K+  +T+EED +I + H +LGN+W+ IA  LPGRTDN +KN+WN+ I+RK+
Sbjct:  132 EVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKV 184          
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB98_ARATH (Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.781e-11
Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 2
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRP 196
            D+K+  +++EED ++I+ H  +GNKW+ IA RLPGRT+N IKN+WN   RR+   R       RP
Sbjct:  266 DIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRP 330          
The following BLAST results are available for this feature:
BLAST of CX289294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
MYBA_XENLA1.697e-1149.12Myb-related protein A OS=Xenopus laevis GN=mybl1 P... [more]
MYB_MOUSE2.217e-1150.88Myb proto-oncogene protein OS=Mus musculus GN=Myb ... [more]
MYB_HUMAN2.217e-1150.88Myb proto-oncogene protein OS=Homo sapiens GN=MYB ... [more]
MYB_CHICK2.217e-1150.88Myb proto-oncogene protein OS=Gallus gallus GN=MYB... [more]
MYB_BOVIN2.217e-1150.88Myb proto-oncogene protein OS=Bos taurus GN=MYB PE... [more]
MYBB_MOUSE2.217e-1148.44Myb-related protein B OS=Mus musculus GN=Mybl2 PE=... [more]
MYB_AVIMB2.895e-1149.12Transforming protein Myb OS=Avian myeloblastosis v... [more]
MYB_DROME3.781e-1155.77Myb protein OS=Drosophila melanogaster GN=Myb PE=1... [more]
MYBB_HUMAN3.781e-1150.94Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=... [more]
MYB98_ARATH3.781e-1146.15Transcription factor MYB98 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC02011D06SK IF1 Citrus clementina cDNA clone C02011D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289294 ID=CX289294; Name=CX289294; organism=Citrus clementina; type=EST; length=536bp
CGACTTAAAGCGCGGTAATTTTACTGATGAAGAAGATGAACTCATTATCA
AACTCCATAGCCTCCTTGGTAACAAGTGGTCATTGATAGCCGGGAGGTTA
CCAGGAAGAACAGACAATGAGATAAAGAATTACTGGAACACACACATAAG
AAGGAAGCTTCTGAACAGAGGGATTGATCCTGCGACACACAGGCCACTCA
ATGAGCCAGCAGTACCTGTAGCAGCAGCTCAAAGTGCTACAACTGCTGCT
CCTGCTGATGTGGCGGCAGCGGCAGCGGCAGCAGCAGCAGCAACAACAAC
AACAATATCATTTTCGGCAGCAGCTGCAAAGGAGGATATAAAACGAGAGA
AAAGGACAATTGGGTTTGTTTGCAAAAATGAGAAACAGCCGTATCATCAT
CACAATCATCATCGTCATCAGCAGCAGCAAGTGATCGTCAAAGAAGAAGA
AGTGACGTGTCCAGACTTGAACCTTGAGCTCAGAATCAGCCCTCCATCAT
CTGCTGATCTTCATCAGCAGCAGCCATTGATTAAAA
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