CX289294

Overview
NameCX289294
Unique NameCX289294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289294_ssr278 microsatellite CX289294_ssr278:278..292. BLAST: Citrus ESTs to Prunus persica proteins V1
CX289294_ssr293 microsatellite CX289294_ssr293:293..304. BLAST: Citrus ESTs to Prunus persica proteins V1
CX289294_ssr441 microsatellite CX289294_ssr441:441..452. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13688 contig Ccv1_Contig13688:463..998. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB1_PHYPA (Myb-related protein Pp1 (Fragment) OS=Physcomitrella patens GN=PP1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.781e-11
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 2 
Query:   65 LGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHR 193
            LGN+WS IA  +P RTDNEIKNYWNTH++++L+  GIDP TH+
Sbjct:    1 LGNRWSAIA--IPRRTDNEIKNYWNTHLKKRLMQMGIDPVTHK 41
[Close]
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYBA_CHICK (Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.449e-11
Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 2 
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRG 172
            ++K+ ++T+ ED +I + H  LGN+W+ IA  LPGRTDN IKN+WN+ +RRK+   G
Sbjct:  136 EVKKSSWTEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQEG 192
[Close]
BLAST of CX289294 vs. ExPASy Swiss-Prot
Match: MYB_XENLA (Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 2 
Query:    2 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRK 157
            ++K+ ++T+EED  I + H  LGN+W+ IA  LPGRTDN IKN+WN+ +RRK
Sbjct:  138 EVKKSSWTEEEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 189
The following BLAST results are available for this feature:
BLAST of CX289294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
MYB1_PHYPA3.781e-1165.12Myb-related protein Pp1 (Fragment) OS=Physcomitrel... [more]
MYBA_CHICK6.449e-1149.12Myb-related protein A OS=Gallus gallus GN=MYBL1 PE... [more]
MYB_XENLA8.423e-1153.85Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02011D06SK IF1 Citrus clementina cDNA clone C02011D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289294 ID=CX289294; Name=CX289294; organism=Citrus clementina; type=EST; length=536bp
CGACTTAAAGCGCGGTAATTTTACTGATGAAGAAGATGAACTCATTATCA
AACTCCATAGCCTCCTTGGTAACAAGTGGTCATTGATAGCCGGGAGGTTA
CCAGGAAGAACAGACAATGAGATAAAGAATTACTGGAACACACACATAAG
AAGGAAGCTTCTGAACAGAGGGATTGATCCTGCGACACACAGGCCACTCA
ATGAGCCAGCAGTACCTGTAGCAGCAGCTCAAAGTGCTACAACTGCTGCT
CCTGCTGATGTGGCGGCAGCGGCAGCGGCAGCAGCAGCAGCAACAACAAC
AACAATATCATTTTCGGCAGCAGCTGCAAAGGAGGATATAAAACGAGAGA
AAAGGACAATTGGGTTTGTTTGCAAAAATGAGAAACAGCCGTATCATCAT
CACAATCATCATCGTCATCAGCAGCAGCAAGTGATCGTCAAAGAAGAAGA
AGTGACGTGTCCAGACTTGAACCTTGAGCTCAGAATCAGCCCTCCATCAT
CTGCTGATCTTCATCAGCAGCAGCCATTGATTAAAA
back to top