CX289295

Overview
NameCX289295
Unique NameCX289295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length452
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289295 vs. ExPASy Swiss-Prot
Match: RLK6_ARATH (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.102e-11
Identity = 37/109 (33.94%), Postives = 56/109 (51.38%), Query Frame = 3 
Query:    3 GTYGYMAPEYAMHGQFSVKSDVYSFGVLVLEIITGKKNSNFYQTDGAADLLSYAWKQWRDGTPLQLLDTNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLN 329
            GT GY+ PEY      + KSDVYSFG+++LEIIT +   N  Q+     +  +       G    ++D  L   Y    V R ++L + C+    A RP+M+ +V+ LN
Sbjct:  756 GTPGYLDPEYYRTNWLNEKSDVYSFGIVLLEIITNQLVIN--QSREKPHIAEWVGLMLTKGDIQNIMDPKLYGDYDSGSVWRAVELAMSCLNPSSARRPTMSQVVIELN 862
[Close]
BLAST of CX289295 vs. ExPASy Swiss-Prot
Match: Y5707_ARATH (Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.275e-11
Identity = 37/106 (34.91%), Postives = 57/106 (53.77%), Query Frame = 3 
Query:    3 GTYGYMAPEYAMHGQFSVKSDVYSFGVLVLEIITGKKNSNFYQTDGAADLLSYAWKQWRDGTPLQLL-DTNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIV 317
            GT+GY APEY   G   +KSDVYSFGV++ EIITG++     +      LL +  +   D     ++ D  L ++Y         +L  LC++++  ERP+M  +V
Sbjct:  257 GTHGYAAPEYVQTGHLRLKSDVYSFGVVLYEIITGRRTIERNKPVAERRLLDWVKEYPADSQRFSMIVDPRLRNNYPAAGARSLAKLADLCLKKNDKERPTMEIVV 362
The following BLAST results are available for this feature:
BLAST of CX289295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
RLK6_ARATH7.102e-1133.94Receptor-like protein kinase At3g21340 OS=Arabidop... [more]
Y5707_ARATH9.275e-1134.91Probable receptor-like protein kinase At5g47070 OS... [more]

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Properties
Property NameValue
Genbank descriptionC02011D07SK IF1 Citrus clementina cDNA clone C02011D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289295 ID=CX289295; Name=CX289295; organism=Citrus clementina; type=EST; length=452bp
TTGGGACATATGGATACATGGCCCCAGAATATGCTATGCATGGGCAATTT
TCTGTGAAATCAGATGTATATAGTTTTGGTGTCCTAGTTTTGGAGATTAT
AACCGGCAAGAAGAACAGCAACTTTTATCAAACAGATGGTGCTGCAGATC
TTTTGAGCTATGCTTGGAAACAATGGAGGGATGGAACTCCTTTGCAGTTG
TTGGATACAAATCTGACAGATTCTTACTCAAGAAATGAAGTGATTAGATG
CATCCAATTGGGCTTATTATGCGTCCAGGAAGATCCAGCTGAGAGGCCAT
CAATGGCAACAATAGTTCTCATGCTCAATAGTTACTCTGTCACACTTCCG
TTGCCTCAACAGCCTGCATTTTTCATAGGCAGTCGAACTGAGAGGGGCTT
GCCCACAAAAGAATTTGAGTGCTCTGATAATACTACAAGCAAGTCGATTC
CA
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