CX289295

Overview
NameCX289295
Unique NameCX289295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length452
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289295 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.448e-13
Identity = 45/138 (32.61%), Postives = 77/138 (55.80%), Query Frame = 3
Query:    3 GTYGYMAPEYAMHGQFSVKSDVYSFGVLVLEIITGKKNSNFYQTDGAADLLSYAWKQW--RDGTPLQLLDTNL-TDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNS-YSVTLPLPQQPAFFIGSRTERGLP 404
            GT+GY+APEYA+ G+ + K DVYSFGV+++E+ITG+K+ +  Q + +  L+S+  + +  ++ +  + +DT +  D  +   V    +L   C   +P +RP M   V +L+S   +  P  Q P    G   +  LP
Sbjct:  755 GTFGYLAPEYAVTGRVTTKVDVYSFGVILMELITGRKSLDESQPEESIHLVSWFKRMYINKEASFKKAIDTTIDLDEETLASVHTVAELAGHCCAREPYQRPDMGHAVNILSSLVELWKPSDQNPEDIYGIDLDMSLP 892          
BLAST of CX289295 vs. ExPASy Swiss-Prot
Match: SRF7_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.448e-13
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 3
Query:   12 GYMAPEYAMHGQFSVKSDVYSFGVLVLEIITGKKNSNFYQTDGAADLLSYAWKQWRDGTPL-QLLDTNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLML 326
            GY APE +M GQ+S+KSDVYSFGV++LE++TG+K  +  ++     L+ +A  Q  D   L +++D  L   Y    + R   +  LCVQ +P  RP M+ +V  L
Sbjct:  585 GYSAPETSMSGQYSLKSDVYSFGVVMLELLTGRKPFDSTRSRSEQSLVRWATPQLHDIDALGKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQAL 690          
BLAST of CX289295 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.448e-13
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 3
Query:   12 GYMAPEYAMHGQFSVKSDVYSFGVLVLEIITGKKNSNFYQTDGAADLLSYAWKQWRDGTPL-QLLDTNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLML 326
            GY APE +M GQ+S+KSD+YSFGV++LE++TG+K  +  ++     L+ +A  Q  D   L +++D  L   Y    + R   +  LCVQ +P  RP M+ +V  L
Sbjct:  582 GYSAPEVSMSGQYSLKSDIYSFGVVMLELLTGRKPFDSTRSRSEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQAL 687          
BLAST of CX289295 vs. ExPASy Swiss-Prot
Match: WAKLH_ARATH (Wall-associated receptor kinase-like 9 OS=Arabidopsis thaliana GN=WAKL9 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.587e-13
Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = 3
Query:    3 GTYGYMAPEYAMHGQFSVKSDVYSFGVLVLEIITGKKNSNFYQTDGAADLLSYAWKQWRDGTPLQLLDTNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNS 332
            GT GYM PEY    QF+ KSDVYSFGV+++E+ITG+K+ +F ++     L +Y     ++     ++D  + D    ++V    ++   C+     +RPSM  + + L+S
Sbjct:  611 GTVGYMDPEYFQSSQFTDKSDVYSFGVVLVELITGEKSISFLRSQENRTLATYFILAMKENKLFDIIDARIRDGCMLSQVTATAKVARKCLNLKGRKRPSMREVSMELDS 720          
BLAST of CX289295 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.587e-13
Identity = 41/121 (33.88%), Postives = 67/121 (55.37%), Query Frame = 3
Query:    3 GTYGYMAPEYAMHGQFSVKSDVYSFGVLVLEIITGKKNSNFYQTDGAADLLSYAWKQWRDGTPLQLLDTNLT-DSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNSYSVTLPLPQQ 362
            GT GY+ PEYA   + + KSD+YSFG+++LE++TGKK       D  A+L      +  D T ++ +D  +T        + +  QL LLC + +P ERP+M  +  +L S   +L + ++
Sbjct:  811 GTIGYIDPEYARTSRINEKSDIYSFGIVLLELLTGKK-----AVDNEANLHQLILSKADDNTVMEAVDPEVTVTCMDLGHIRKTFQLALLCTKRNPLERPTMLEVSRVLLSLVPSLQVAKK 926          
BLAST of CX289295 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 9.909e-13
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 3
Query:    3 GTYGYMAPEYAMHGQFSVKSDVYSFGVLVLEIITGKKNSNFYQTDGAADLLSYAWKQWRDGT--PLQLLDTNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNS 332
            GT+GY+APEYA  G  + KSD+YSFGVL+LE ITG+   ++ +     +L+   W +   GT    +++D  L    S++ + R + + L CV  +  +RP M+ +  ML S
Sbjct:  347 GTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVE--WLKMMVGTRRAEEVVDPRLEPRPSKSALKRALLVSLRCVDPEAEKRPRMSQVARMLES 456          
BLAST of CX289295 vs. ExPASy Swiss-Prot
Match: FEI1_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 9.909e-13
Identity = 39/120 (32.50%), Postives = 66/120 (55.00%), Query Frame = 3
Query:    3 GTYGYMAPEYAMHGQFSVKSDVYSFGVLVLEIITGKKNSNFYQTDGAADLLSYAWKQWRDGTPLQLLDTNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNSYSVTLPLPQQ 362
            GT+GY+APEY   G+ + K+DVYSFGVLVLE+++GK+ ++    +   +++ +      +  P  ++D N  +      +   + +   CV   P ERP+M  +V +L S  V  P P +
Sbjct:  467 GTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNVVGWLKFLISEKRPRDIVDPN-CEGMQMESLDALLSIATQCVSPSPEERPTMHRVVQLLES-EVMTPCPSE 584          
BLAST of CX289295 vs. ExPASy Swiss-Prot
Match: Y3288_ARATH (Probable inactive receptor kinase At3g02880 OS=Arabidopsis thaliana GN=At3g02880 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.294e-12
Identity = 39/111 (35.14%), Postives = 58/111 (52.25%), Query Frame = 3
Query:   12 GYMAPEYAMHGQFSVKSDVYSFGVLVLEIITGKKNSNFYQTDGAADLLSYAWKQWRDGTPLQLLDTNLT--DSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNSYS 338
            GY APE     + S K+DVYSFGVL+LE++TGK  ++    +   DL  +        TP  +LD  LT         +IR +++G+ C  + P  RPSMA +  ++   S
Sbjct:  506 GYRAPEITDARKISQKADVYSFGVLILELLTGKSPTHQQLNEEGVDLPRWVQSVTEQQTPSDVLDPELTRYQPEGNENIIRLLKIGMSCTAQFPDSRPSMAEVTRLIEEVS 616          
BLAST of CX289295 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.294e-12
Identity = 41/106 (38.68%), Postives = 60/106 (56.60%), Query Frame = 3
Query:    3 GTYGYMAPEYAMHGQFSVKSDVYSFGVLVLEIITGKKNSNFYQTDGAADLLSYAWKQWRDGTP-LQLLDTNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIV 317
            GT GY APEY   G  SVKSDVYSFGV++LE+++G++  +  Q  G  +L+ +A     +    L+++D  L   YS    ++   L L C+  D   RP+M  IV
Sbjct:  242 GTQGYAAPEYLATGHLSVKSDVYSFGVVLLELLSGRRAIDKNQPVGEHNLVDWARPYLTNKRRLLRVMDPRLQGQYSLTRALKIAVLALDCISIDAKSRPTMNEIV 347          
BLAST of CX289295 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.294e-12
Identity = 39/117 (33.33%), Postives = 62/117 (52.99%), Query Frame = 3
Query:    3 GTYGYMAPEYAMHGQFSVKSDVYSFGVLVLEIITGKKNSNFYQTDGAADLLSYAWKQWRDGTPL-QLLDTNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNSYSVTLP 350
            GT+GY APEY   G+ + KSDVYSFGV++LE+++G++  +  +      L+ +A     D   L +++DT L   Y +        L L C+  D   RP M+ ++  L+    T P
Sbjct:  255 GTHGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKSKVGMEQSLVDWATPYLGDKRKLFRIMDTRLGGQYPQKGAYTAASLALQCLNPDAKLRPKMSEVLAKLDQLESTKP 371          
The following BLAST results are available for this feature:
BLAST of CX289295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
TMK1_ARATH4.448e-1332.61Probable receptor protein kinase TMK1 OS=Arabidops... [more]
SRF7_ARATH4.448e-1339.62Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsi... [more]
SRF6_ARATH4.448e-1338.68Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
WAKLH_ARATH7.587e-1333.64Wall-associated receptor kinase-like 9 OS=Arabidop... [more]
ERL1_ARATH7.587e-1333.88LRR receptor-like serine/threonine-protein kinase ... [more]
Y2296_ARATH9.909e-1336.61Probable receptor-like protein kinase At2g42960 OS... [more]
FEI1_ARATH9.909e-1332.50LRR receptor-like serine/threonine-protein kinase ... [more]
Y3288_ARATH1.294e-1235.14Probable inactive receptor kinase At3g02880 OS=Ara... [more]
NAK_ARATH1.294e-1238.68Probable serine/threonine-protein kinase NAK OS=Ar... [more]
APK2B_ARATH1.294e-1233.33Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC02011D07SK IF1 Citrus clementina cDNA clone C02011D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289295 ID=CX289295; Name=CX289295; organism=Citrus clementina; type=EST; length=452bp
TTGGGACATATGGATACATGGCCCCAGAATATGCTATGCATGGGCAATTT
TCTGTGAAATCAGATGTATATAGTTTTGGTGTCCTAGTTTTGGAGATTAT
AACCGGCAAGAAGAACAGCAACTTTTATCAAACAGATGGTGCTGCAGATC
TTTTGAGCTATGCTTGGAAACAATGGAGGGATGGAACTCCTTTGCAGTTG
TTGGATACAAATCTGACAGATTCTTACTCAAGAAATGAAGTGATTAGATG
CATCCAATTGGGCTTATTATGCGTCCAGGAAGATCCAGCTGAGAGGCCAT
CAATGGCAACAATAGTTCTCATGCTCAATAGTTACTCTGTCACACTTCCG
TTGCCTCAACAGCCTGCATTTTTCATAGGCAGTCGAACTGAGAGGGGCTT
GCCCACAAAAGAATTTGAGTGCTCTGATAATACTACAAGCAAGTCGATTC
CA
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