CX289298

Overview
NameCX289298
Unique NameCX289298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10254 contig Ccv1_Contig10254:679..1194. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289298 vs. ExPASy Swiss-Prot
Match: SAHH_PETCR (Adenosylhomocysteinase OS=Petroselinum crispum GN=SAHH PE=2 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 3.215e-86
Identity = 155/171 (90.64%), Postives = 164/171 (95.91%), Query Frame = 3
Query:    3 LKADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEI 515
            LK+DP KYHKMK+RLVGVSEETTTGVKRLYQMQ+NGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVA++ GYGDVGKGCAAA+KQAGARVIVTEIDPICALQA MEGLQVL LEDV+S+ DIFVTTTGNKDIIMV  M+KMKNNAIVCNIGHFDNEI
Sbjct:  185 LKSDPMKYHKMKDRLVGVSEETTTGVKRLYQMQQNGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVALIAGYGDVGKGCAAAMKQAGARVIVTEIDPICALQATMEGLQVLPLEDVVSEVDIFVTTTGNKDIIMVSDMRKMKNNAIVCNIGHFDNEI 355          
BLAST of CX289298 vs. ExPASy Swiss-Prot
Match: SAHH_SOLLC (Adenosylhomocysteinase OS=Solanum lycopersicum GN=SAHH PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 5.675e-83
Identity = 152/171 (88.89%), Postives = 160/171 (93.57%), Query Frame = 3
Query:    3 LKADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEI 515
            LK DP +Y KMKERLVGVSEETTTGVK+LYQM  NG+LLF  INVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVA+V GYGDVGKGCAAA+KQAGARVIVTEIDPICALQA MEGLQVL LEDV+S+ DIFVTTTGNKDIIMVDHM+KMKNNAIVCNIGHFDNEI
Sbjct:  185 LKTDPLRYTKMKERLVGVSEETTTGVKKLYQMPANGSLLFLPINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVALVAGYGDVGKGCAAAMKQAGARVIVTEIDPICALQATMEGLQVLFLEDVVSEVDIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEI 355          
BLAST of CX289298 vs. ExPASy Swiss-Prot
Match: SAHH_BACTN (Adenosylhomocysteinase OS=Bacteroides thetaiotaomicron GN=ahcY PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.227e-69
Identity = 124/171 (72.51%), Postives = 145/171 (84.80%), Query Frame = 3
Query:    3 LKADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEI 515
            L  D  ++H++ E + GVSEETTTGV RLYQMQE G LLFPA NVNDSVTKSKFDNLYGCR SL DG+ RATDVMIAGKV VVCGYGDVGKGC+ +++  GARV+VTE+DPICALQA MEG +V+T+ED  ++ +IFVTTTGN DII +DHM+KMK+ AIVCNIGHFDNEI
Sbjct:  181 LAEDKTRWHRVAEEMRGVSEETTTGVHRLYQMQEEGKLLFPAFNVNDSVTKSKFDNLYGCRESLADGIKRATDVMIAGKVVVVCGYGDVGKGCSHSMRSYGARVLVTEVDPICALQAAMEGFEVVTMEDACTEGNIFVTTTGNIDIIRIDHMEKMKDQAIVCNIGHFDNEI 351          
BLAST of CX289298 vs. ExPASy Swiss-Prot
Match: SAHH_CHLP8 (Adenosylhomocysteinase OS=Chlorobaculum parvum (strain NCIB 8327) GN=ahcY PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 2.734e-69
Identity = 126/168 (75.00%), Postives = 144/168 (85.71%), Query Frame = 3
Query:   12 DPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEI 515
            D +++HK+   + GVSEETTTGV RLYQM E G LLFPAINVNDSVTKSKFDNLYGCR SL DG+ RATDVMIAGKVAVV GYGDVGKGCA +++  GARVIVTEIDPICALQA MEG QV T+E+ L + +I+VTTTGNKD+I ++HMKKMK+ AIVCNIGHFDNEI
Sbjct:  179 DNQRWHKVAAGMKGVSEETTTGVHRLYQMMEKGELLFPAINVNDSVTKSKFDNLYGCRESLADGIKRATDVMIAGKVAVVLGYGDVGKGCAHSMRSYGARVIVTEIDPICALQAAMEGFQVTTIEEALEEGNIYVTTTGNKDVITLEHMKKMKDEAIVCNIGHFDNEI 346          
BLAST of CX289298 vs. ExPASy Swiss-Prot
Match: SAHH_BACFR (Adenosylhomocysteinase OS=Bacteroides fragilis GN=ahcY PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 1.772e-68
Identity = 122/171 (71.35%), Postives = 144/171 (84.21%), Query Frame = 3
Query:    3 LKADPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEI 515
            L  D +++H++   + GVSEETTTGV RLYQMQE G LLFPA NVNDSVTKSKFDNLYGCR SL DG+ RATDVMIAGKV VVCGYGDVGKGC+ +++  GARV+VTE+DPICALQA MEG +V+T+ED   + +IFVTTTGN DII +DHM++MK+ AIVCNIGHFDNEI
Sbjct:  192 LAEDKERWHRVAAEVRGVSEETTTGVHRLYQMQEEGKLLFPAFNVNDSVTKSKFDNLYGCRESLADGIKRATDVMIAGKVVVVCGYGDVGKGCSHSMRSYGARVLVTEVDPICALQAAMEGFEVVTMEDACKEGNIFVTTTGNIDIIRIDHMEQMKDQAIVCNIGHFDNEI 362          
BLAST of CX289298 vs. ExPASy Swiss-Prot
Match: SAHH_CHLL2 (Adenosylhomocysteinase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=ahcY PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 3.023e-68
Identity = 123/168 (73.21%), Postives = 143/168 (85.12%), Query Frame = 3
Query:   12 DPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEI 515
            D +++HK+   + GVSEETTTGV RLYQM E G LLFPAINVNDSVTKSKFDNLYGCR SL DG+ RATDVMIAGKV VV GYGDVGKGCA +++  GARVIVTEIDPICALQA MEG +V T+ED + + +IFVTTTGNKD+I ++HMK+M++ AIVCNIGHFDNEI
Sbjct:  179 DTQRWHKVAAEMKGVSEETTTGVHRLYQMMEKGELLFPAINVNDSVTKSKFDNLYGCRESLADGIKRATDVMIAGKVVVVLGYGDVGKGCAHSMRTYGARVIVTEIDPICALQASMEGFEVTTMEDAVGEGNIFVTTTGNKDVITLEHMKQMRDEAIVCNIGHFDNEI 346          
BLAST of CX289298 vs. ExPASy Swiss-Prot
Match: SAHH_CHLCH (Adenosylhomocysteinase OS=Chlorobium chlorochromatii (strain CaD3) GN=ahcY PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 5.157e-68
Identity = 123/168 (73.21%), Postives = 143/168 (85.12%), Query Frame = 3
Query:   12 DPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEI 515
            D +++HK+   + GVSEETTTGV RLYQM E G LLFPAINVNDSVTKSKFDNLYGCR SL DG+ RATDVMIAGKV VV GYGDVGKGCA +++  GARVIVTEIDPICALQA MEG +V T+ED + + +IFVTTTGNKD+I ++HMK+M++ AIVCNIGHFDNEI
Sbjct:  179 DNQRWHKVAADMKGVSEETTTGVHRLYQMMEKGELLFPAINVNDSVTKSKFDNLYGCRESLADGIKRATDVMIAGKVTVVLGYGDVGKGCAHSMRSYGARVIVTEIDPICALQAAMEGFEVATMEDAVHEGNIFVTTTGNKDVITLEHMKQMRDEAIVCNIGHFDNEI 346          
BLAST of CX289298 vs. ExPASy Swiss-Prot
Match: SAHH_PELLD (Adenosylhomocysteinase OS=Pelodictyon luteolum (strain DSM 273) GN=ahcY PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 1.960e-67
Identity = 121/168 (72.02%), Postives = 142/168 (84.52%), Query Frame = 3
Query:   12 DPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEI 515
            D  ++HK+ + + GVSEETTTGV RLYQM E G LLFPAINVNDSVTKSKFDNLYGCR SL DG+ RATDVMIAGKVAVV GYGDVGKGCA +++  GARVIVTEIDPICALQA MEG +V T++  + + +IFVTTTGNKD++ ++HMK+M + AIVCNIGHFDNEI
Sbjct:  179 DSNRWHKVAKEMKGVSEETTTGVHRLYQMMEKGELLFPAINVNDSVTKSKFDNLYGCRESLADGIKRATDVMIAGKVAVVLGYGDVGKGCAHSMRSYGARVIVTEIDPICALQAAMEGFEVTTMDKAVKEGNIFVTTTGNKDVVTLEHMKQMPDEAIVCNIGHFDNEI 346          
BLAST of CX289298 vs. ExPASy Swiss-Prot
Match: SAHH_CHLTE (Adenosylhomocysteinase OS=Chlorobium tepidum GN=ahcY PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 4.366e-67
Identity = 121/168 (72.02%), Postives = 142/168 (84.52%), Query Frame = 3
Query:   12 DPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEI 515
            D +++HK+   + GVSEETTTGV RLYQM E G LLFPAINVNDSVTKSKFDNLYGCR SL DG+ RATDVMIAGKV VV GYGDVGKGCA +++  GARVIVTEIDPICALQA MEG +V T+E+ + + +IFVT TGNKD+I +DH+K+M++ AIVCNIGHFDNEI
Sbjct:  179 DNQRWHKVAAGMKGVSEETTTGVHRLYQMMEKGELLFPAINVNDSVTKSKFDNLYGCRESLADGIKRATDVMIAGKVVVVLGYGDVGKGCAHSMRSYGARVIVTEIDPICALQAAMEGFEVTTMEEAVKEGNIFVTATGNKDVITLDHIKQMRDEAIVCNIGHFDNEI 346          
BLAST of CX289298 vs. ExPASy Swiss-Prot
Match: SAHH_PELPB (Adenosylhomocysteinase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 1.659e-66
Identity = 120/168 (71.43%), Postives = 142/168 (84.52%), Query Frame = 3
Query:   12 DPKKYHKMKERLVGVSEETTTGVKRLYQMQENGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLQVLTLEDVLSDADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEI 515
            D +++HK+   + GVSEETTTGV RLYQM E G LLFPAINVNDSVTKSKFDNLYGCR SL DG+ RATDVM+AGKV VV GYGDVGKG A +++  GARVIVTEIDPICALQA MEG +V T+++ + + +IFVTTTGNKD+I ++HMK+MK+ AIVCNIGHFDNEI
Sbjct:  179 DSQRWHKVAAEMKGVSEETTTGVHRLYQMMEKGELLFPAINVNDSVTKSKFDNLYGCRESLADGIKRATDVMVAGKVVVVLGYGDVGKGSARSMRAYGARVIVTEIDPICALQAAMEGYEVSTMDEAVKEGNIFVTTTGNKDVITLEHMKQMKDEAIVCNIGHFDNEI 346          
The following BLAST results are available for this feature:
BLAST of CX289298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 244
Match NameE-valueIdentityDescription
SAHH_PETCR3.215e-8690.64Adenosylhomocysteinase OS=Petroselinum crispum GN=... [more]
SAHH_SOLLC5.675e-8388.89Adenosylhomocysteinase OS=Solanum lycopersicum GN=... [more]
SAHH_BACTN1.227e-6972.51Adenosylhomocysteinase OS=Bacteroides thetaiotaomi... [more]
SAHH_CHLP82.734e-6975.00Adenosylhomocysteinase OS=Chlorobaculum parvum (st... [more]
SAHH_BACFR1.772e-6871.35Adenosylhomocysteinase OS=Bacteroides fragilis GN=... [more]
SAHH_CHLL23.023e-6873.21Adenosylhomocysteinase OS=Chlorobium limicola (str... [more]
SAHH_CHLCH5.157e-6873.21Adenosylhomocysteinase OS=Chlorobium chlorochromat... [more]
SAHH_PELLD1.960e-6772.02Adenosylhomocysteinase OS=Pelodictyon luteolum (st... [more]
SAHH_CHLTE4.366e-6772.02Adenosylhomocysteinase OS=Chlorobium tepidum GN=ah... [more]
SAHH_PELPB1.659e-6671.43Adenosylhomocysteinase OS=Pelodictyon phaeoclathra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02011D10SK IF1 Citrus clementina cDNA clone C02011D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289298 ID=CX289298; Name=CX289298; organism=Citrus clementina; type=EST; length=516bp
GGTTGAAGGCCGATCCCAAGAAGTACCACAAAATGAAGGAAAGATTAGTT
GGTGTTTCCGAAGAAACCACGACCGGTGTCAAGAGATTGTATCAGATGCA
AGAAAATGGAACCCTCTTGTTCCCTGCCATCAATGTCAATGACTCTGTCA
CCAAGAGCAAGTTTGATAACTTGTATGGATGCCGCCACTCGCTCCCAGAT
GGTTTGATGAGAGCTACTGATGTTATGATTGCCGGAAAGGTTGCTGTTGT
TTGCGGTTATGGTGATGTTGGCAAGGGTTGTGCTGCTGCTTTGAAGCAAG
CCGGTGCTCGTGTAATTGTTACCGAGATTGATCCAATTTGCGCTCTCCAG
GCTCTTATGGAGGGTCTTCAAGTCCTAACCCTTGAGGATGTCCTCTCCGA
TGCTGACATCTTTGTTACCACCACCGGTAACAAGGACATCATCATGGTTG
ACCACATGAAGAAGATGAAGAACAATGCAATTGTTTGCAACATTGGTCAC
TTTGATAATGAAATTG
back to top