CX289304

Overview
NameCX289304
Unique NameCX289304
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig855 contig Ccv1_Contig855:28..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289304 vs. ExPASy Swiss-Prot
Match: RS17_NITMS (30S ribosomal protein S17P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps17p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.069e-15
Identity = 39/107 (36.45%), Postives = 67/107 (62.62%), Query Frame = 2
Query:  176 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 496
            ++IGL  K P+   E    DK CPF G ++IRG++  G    +K  +TI ++++   +  K++RY +  S+I AH+  C  V+ GD+V+  +CRP+SK+V + V++V
Sbjct:    3 RNIGLKVKEPKRECE----DKNCPFHGELAIRGKLFDGKVTGSKAKQTITLQKDAPVYFNKFKRYARGKSSIHAHVPGCIDVESGDNVLTAECRPISKSVSYVVVEV 105          
BLAST of CX289304 vs. ExPASy Swiss-Prot
Match: RS17_THEAC (30S ribosomal protein S17P OS=Thermoplasma acidophilum GN=rps17p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.988e-14
Identity = 36/110 (32.73%), Postives = 61/110 (55.45%), Query Frame = 2
Query:  170 FWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 499
            + ++IGL  K P    E    D  CP+ G +S+RG++L G   SA M ++ +V R Y  ++ KY+R   +      H+  C ++K GD V   +CR L+KT+ F +++ +
Sbjct:    2 YTRNIGLDVKLP----ESECNDPHCPYHGKLSVRGQVLTGKVVSANMTKSAVVAREYQQYIPKYERKATKIKKYHVHVPDCIKIKPGDTVRFAECRKLAKTISFVIVEKV 107          
BLAST of CX289304 vs. ExPASy Swiss-Prot
Match: RS17_PYRAE (30S ribosomal protein S17P OS=Pyrobaculum aerophilum GN=rps17p PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.937e-13
Identity = 36/105 (34.29%), Postives = 60/105 (57.14%), Query Frame = 2
Query:  176 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVL 490
            K+IG+    P  ++     D  CP+ G + +R ++L  T    +M++  +V   +LH+++KY RYE+R   +   +  C  VK GD VII + RPLSKT+ + V+
Sbjct:    4 KNIGIPHVLPPASVCD---DPLCPWHGHLKVRLKLLEVTVEKVRMHKAAVVIHEWLHYIRKYNRYERRRKRMRVRVPECIEVKPGDKVIIAETRPLSKTIAWVVI 105          
BLAST of CX289304 vs. ExPASy Swiss-Prot
Match: RS17L_METAC (Putative 30S ribosomal protein S17P-like OS=Methanosarcina acetivorans GN=MA_2024 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.303e-13
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 2
Query:  176 KSIGL-GFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 493
            + IG+ G K P E       D +CPF G +S+RG+IL G   S KM + I+++R    +  KYQR ++  S I A+  PC   K GD + I +CRPL+K   F V++
Sbjct:    2 RDIGINGIKLPTEDCN----DPECPFHGKLSVRGQILKGIVISDKMTKNIVMKRYREKWSYKYQRKQRVSSKIHAYSPPCMEAKIGDIITIAECRPLNKGSSFVVIE 104          
BLAST of CX289304 vs. ExPASy Swiss-Prot
Match: RS17_THEVO (30S ribosomal protein S17P OS=Thermoplasma volcanium GN=rps17p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.635e-13
Identity = 35/108 (32.41%), Postives = 57/108 (52.78%), Query Frame = 2
Query:  176 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 499
            ++IGL    P    E    D  CPF G + +RG++L G   S  M R+++V R Y  ++ KY+R   +      H+  C  ++ GD V   +CR L+KT+ F V++ +
Sbjct:    4 RNIGLDVSVP----EKECTDPHCPFHGNLPVRGQVLTGKVISTAMTRSVVVAREYQQYIPKYERKATKIKKYHVHVPDCIELRVGDTVRFAECRKLAKTISFVVVEKV 107          
BLAST of CX289304 vs. ExPASy Swiss-Prot
Match: RS17_NANEQ (30S ribosomal protein S17P OS=Nanoarchaeum equitans GN=rps17p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.359e-13
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  233 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAG 508
            DKKCP  G + +RG    G       N+T+ +     +++ KY+RYE R + I A++  C + +KEGD+V+IG+ RPLSKT  F VL  +  G
Sbjct:   16 DKKCPHHGHLKVRGFFFKGKVIKKSDNKTVKIEIIRYYWLPKYERYELRRTRITAYLPECLKDIKEGDYVLIGETRPLSKTKHFVVLGKLKKG 108          
The following BLAST results are available for this feature:
BLAST of CX289304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS17_NITMS2.069e-1536.4530S ribosomal protein S17P OS=Nitrosopumilus marit... [more]
RS17_THEAC2.988e-1432.7330S ribosomal protein S17P OS=Thermoplasma acidoph... [more]
RS17_PYRAE1.937e-1334.2930S ribosomal protein S17P OS=Pyrobaculum aerophil... [more]
RS17L_METAC3.303e-1339.25Putative 30S ribosomal protein S17P-like OS=Methan... [more]
RS17_THEVO5.635e-1332.4130S ribosomal protein S17P OS=Thermoplasma volcani... [more]
RS17_NANEQ7.359e-1339.7830S ribosomal protein S17P OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionC02011E04SK IF1 Citrus clementina cDNA clone C02011E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289304 ID=CX289304; Name=CX289304; organism=Citrus clementina; type=EST; length=555bp
GCATTGTGTTAGCCACCTCCGCCCAGTGCGTTCATCATCCTCAACAACTC
AGCCCCGAAATCCAGCCATGGCGGAGCAGACCGAGAAGGCGTTTTTGAAG
CAGCCCAAGGTGTTTCTCAGCTCGAAGAAGGCAGGAAAAGGAAAGAGGCC
AGGAAAGGGAGGGAATCGATTCTGGAAGAGCATAGGCTTGGGATTCAAGA
CTCCCAGAGAGGCAATTGAAGGGACTTACATTGATAAGAAGTGTCCGTTC
ACCGGCACTGTTTCCATCAGGGGTCGTATCCTTGCTGGTACTTGCCACAG
TGCTAAGATGAACAGAACCATCATCGTTAGGCGTAACTACCTTCACTTTG
TGAAGAAATATCAGAGGTATGAGAAGAGGCACTCTAACATTCCAGCACAC
ATCTCACCTTGTTTCCGTGTGAAAGAGGGAGACCATGTTATCATTGGCCA
GTGCAGGCCTTTGTCAAAGACGGTCAGGTTTAATGTCTTGAAAGTGATAC
CTGCTGGGTCTTCTGGTGGTGCAAAGAAGGCATTCACGGCGATGTGAGTT
GGAGT
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