CX289307

Overview
NameCX289307
Unique NameCX289307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RICAE (50S ribosomal protein L14 OS=Rickettsia africae (strain ESF-5) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.021e-11
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQV 436
            IQM+++L+V DNSGAK VMCI+ L G    VA+LGD IV SVK+A+P GKVKKG V
Sbjct:    2 IQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSVKDAIPGGKVKKGDV 57          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_NAUPA (50S ribosomal protein L14 OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.021e-11
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ  T LKV DNSGAK +MCI+ L G  R+ A +GD IVASVK+A+P GK+KKGQVV
Sbjct:    2 IQPFTRLKVADNSGAKEIMCIKVLGGSKRRYASVGDIIVASVKKALPNGKIKKGQVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_GEOUR (50S ribosomal protein L14 OS=Geobacter uraniireducens (strain Rf4) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.021e-11
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T+L V DNSGAK + CI+ L G  RK A +GD IVASVKEA+P  KVKKG VV
Sbjct:    2 IQMQTILDVADNSGAKKLFCIKVLGGSKRKYAGIGDIIVASVKEAIPNSKVKKGDVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_GEOSF (50S ribosomal protein L14 OS=Geobacter sp. (strain FRC-32) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.021e-11
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T+L V DNSGAK + CI+ L G  RK A +GD IVASVKEA+P  KVKKG VV
Sbjct:    2 IQMQTILDVADNSGAKKLFCIKVLGGSKRKYAGIGDIIVASVKEAIPNSKVKKGDVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_CLOTH (50S ribosomal protein L14 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.021e-11
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ++T+LKV DN+GAK VMCI+ L G  RK A +GD IVASVK+A P G VKKG VV
Sbjct:    2 IQVQTMLKVADNTGAKKVMCIKVLGGSKRKYANIGDVIVASVKDATPGGVVKKGDVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RICTY (50S ribosomal protein L14 OS=Rickettsia typhi GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.333e-11
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQV 436
            IQM+++L+V DNSGAK VMCI+ L G    +A+LGD IV S+KEA+P GKVKKG V
Sbjct:    2 IQMQSILEVADNSGAKKVMCIKVLGGSHHMMAKLGDVIVVSIKEAIPGGKVKKGDV 57          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RICPR (50S ribosomal protein L14 OS=Rickettsia prowazekii GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.333e-11
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQV 436
            IQM+++L+V DNSGAK VMCI+ L G    +A+LGD IV S+KEA+P GKVKKG V
Sbjct:    2 IQMQSILEVADNSGAKKVMCIKVLGGSHHMMAKLGDVIVVSIKEAIPGGKVKKGDV 57          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_ARCB4 (50S ribosomal protein L14 OS=Arcobacter butzleri (strain RM4018) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.333e-11
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ  T L V DN+GAK +MCI+ L G  R+ A +GD IVASVK+A+PTGK+KKGQVV
Sbjct:    2 IQSFTRLNVADNTGAKEIMCIKVLGGSKRRYATVGDVIVASVKKALPTGKIKKGQVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RICM5 (50S ribosomal protein L14 OS=Rickettsia massiliae (strain Mtu5) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.741e-11
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQV 436
            IQM+++L+V DNSGAK VMCI+ L G    VA+LGD IV SVK+A+P GKVKKG V
Sbjct:    2 IQMQSMLEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSVKDAIPGGKVKKGDV 57          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_BDEBA (50S ribosomal protein L14 OS=Bdellovibrio bacteriovorus GN=rplN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.741e-11
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQV 436
            IQM+T L V DNSGAK VMC++ L G  R+VA +GD IV S+KEA+P  KVKKG V
Sbjct:    2 IQMQTRLNVADNSGAKEVMCVKVLGGSKRRVASIGDVIVVSIKEALPNAKVKKGDV 57          
The following BLAST results are available for this feature:
BLAST of CX289307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RL14_RICAE1.021e-1164.2950S ribosomal protein L14 OS=Rickettsia africae (s... [more]
RL14_NAUPA1.021e-1164.9150S ribosomal protein L14 OS=Nautilia profundicola... [more]
RL14_GEOUR1.021e-1164.9150S ribosomal protein L14 OS=Geobacter uraniireduc... [more]
RL14_GEOSF1.021e-1164.9150S ribosomal protein L14 OS=Geobacter sp. (strain... [more]
RL14_CLOTH1.021e-1164.9150S ribosomal protein L14 OS=Clostridium thermocel... [more]
RL14_RICTY1.333e-1162.5050S ribosomal protein L14 OS=Rickettsia typhi GN=r... [more]
RL14_RICPR1.333e-1162.5050S ribosomal protein L14 OS=Rickettsia prowazekii... [more]
RL14_ARCB41.333e-1163.1650S ribosomal protein L14 OS=Arcobacter butzleri (... [more]
RL14_RICM51.741e-1164.2950S ribosomal protein L14 OS=Rickettsia massiliae ... [more]
RL14_BDEBA1.741e-1162.5050S ribosomal protein L14 OS=Bdellovibrio bacterio... [more]

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Properties
Property NameValue
Genbank descriptionC02011E07SK IF1 Citrus clementina cDNA clone C02011E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289307 ID=CX289307; Name=CX289307; organism=Citrus clementina; type=EST; length=443bp
TGAAATAATAGGTTGGGGCTACTTAGCTCCATTCGAACCTAACGCCAACT
AGGGTTTACACGCCACCAAAGCTCACAGCACTTCCATTCTACTTCTCCAG
GGTCGGCACATTGAGTATAGACATATGGCTGCAAGTTTGGCTTCAAAATG
GTCTCGAGTAATACTAGTCGGACGGTCACTTCTTGGAGGCCTTGGAAACA
ACTTGTCTGGTTTGTCGAGCACATCTCATGAGATGGCATCCAGCAATTTC
TTGTCTCAGCAGCAAAGGACTTTCATACAGATGAGGACTGTTCTAAAAGT
TGTGGACAACTCTGGGGCAAAAACAGTGATGTGCATACAACCTCTAAAAG
GGAGGAAAGTGGCGAGATTGGGGGACACAATTGTTGCATCGGTAAAGGAA
GCTATGCCCACTGGTAAAGTGAAGAAAGGACAAGTTGTGCATG
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