CX289307

Overview
NameCX289307
Unique NameCX289307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_SULNB (50S ribosomal protein L14 OS=Sulfurovum sp. (strain NBC37-1) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.274e-11
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ  T L V DNSGAK +MCI+ L G  R+ A +GD IVASVK+A+PTGKVKKG+VV
Sbjct:    2 IQGFTRLNVADNSGAKEIMCIKVLGGSKRRYASVGDVIVASVKKALPTGKVKKGKVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_PELPD (50S ribosomal protein L14 OS=Pelobacter propionicus (strain DSM 2379) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.274e-11
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T+L V DNSGAK + CI+ L G  RK A +GD IVASV+EA+P  KVKKG VV
Sbjct:    2 IQMQTILDVADNSGAKKLFCIKVLGGSKRKYAGVGDIIVASVREALPNSKVKKGDVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_ORITI (50S ribosomal protein L14 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.274e-11
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQV 436
            IQM+T+L V DNSGAK VMCI+ L G    +A LGD IV S+K ++P GKVKKG+V
Sbjct:    2 IQMQTILNVADNSGAKEVMCIKVLGGTHHMIAHLGDVIVVSIKSSIPKGKVKKGEV 57          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_ORITB (50S ribosomal protein L14 OS=Orientia tsutsugamushi (strain Boryong) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.274e-11
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQV 436
            IQM+T+L V DNSGAK VMCI+ L G    +A LGD IV S+K ++P GKVKKG+V
Sbjct:    2 IQMQTILNVADNSGAKKVMCIKVLGGTHHMIAHLGDVIVVSIKSSIPKGKVKKGEV 57          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_CLOPS (50S ribosomal protein L14 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.274e-11
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ +T+LKV DNSGAK +MCI+ L G  RK   +GD IVASVK A P G VKKG+VV
Sbjct:    2 IQQQTLLKVADNSGAKEIMCIRVLGGSKRKFGNIGDVIVASVKSATPGGVVKKGEVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_CLOPE (50S ribosomal protein L14 OS=Clostridium perfringens GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.274e-11
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ +T+LKV DNSGAK +MCI+ L G  RK   +GD IVASVK A P G VKKG+VV
Sbjct:    2 IQQQTLLKVADNSGAKEIMCIRVLGGSKRKFGNIGDVIVASVKSATPGGVVKKGEVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_CLOP1 (50S ribosomal protein L14 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.274e-11
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ +T+LKV DNSGAK +MCI+ L G  RK   +GD IVASVK A P G VKKG+VV
Sbjct:    2 IQQQTLLKVADNSGAKEIMCIRVLGGSKRKFGNIGDVIVASVKSATPGGVVKKGEVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_WOLSU (50S ribosomal protein L14 OS=Wolinella succinogenes GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.970e-11
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ  T L V DNSGAK VMCI+ L G  R+ A +GD I+ASVK+A+P GK+KKGQVV
Sbjct:    2 IQSFTRLTVADNSGAKEVMCIKVLGGSKRRYATVGDVIIASVKKALPNGKIKKGQVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_HAHCH (50S ribosomal protein L14 OS=Hahella chejuensis (strain KCTC 2396) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.970e-11
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ +TVL V DNSGA+ VMCI+ L G  R+ A +GD I  SVKEA+P GKVKKGQV+
Sbjct:    2 IQTQTVLDVADNSGARRVMCIKVLGGSHRRYASIGDVIKVSVKEAIPRGKVKKGQVL 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_GEOSM (50S ribosomal protein L14 OS=Geobacter sp. (strain M21) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.970e-11
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T+L V DNSGAK + CI+ L G  R+ A +GD IVASVKEA+P  KVKKG VV
Sbjct:    2 IQMQTLLDVADNSGAKKLFCIKVLGGSKRRYAGIGDIIVASVKEALPNSKVKKGDVV 58          
The following BLAST results are available for this feature:
BLAST of CX289307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RL14_SULNB2.274e-1164.9150S ribosomal protein L14 OS=Sulfurovum sp. (strai... [more]
RL14_PELPD2.274e-1163.1650S ribosomal protein L14 OS=Pelobacter propionicu... [more]
RL14_ORITI2.274e-1160.7150S ribosomal protein L14 OS=Orientia tsutsugamush... [more]
RL14_ORITB2.274e-1160.7150S ribosomal protein L14 OS=Orientia tsutsugamush... [more]
RL14_CLOPS2.274e-1163.1650S ribosomal protein L14 OS=Clostridium perfringe... [more]
RL14_CLOPE2.274e-1163.1650S ribosomal protein L14 OS=Clostridium perfringe... [more]
RL14_CLOP12.274e-1163.1650S ribosomal protein L14 OS=Clostridium perfringe... [more]
RL14_WOLSU2.970e-1163.1650S ribosomal protein L14 OS=Wolinella succinogene... [more]
RL14_HAHCH2.970e-1163.1650S ribosomal protein L14 OS=Hahella chejuensis (s... [more]
RL14_GEOSM2.970e-1163.1650S ribosomal protein L14 OS=Geobacter sp. (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02011E07SK IF1 Citrus clementina cDNA clone C02011E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289307 ID=CX289307; Name=CX289307; organism=Citrus clementina; type=EST; length=443bp
TGAAATAATAGGTTGGGGCTACTTAGCTCCATTCGAACCTAACGCCAACT
AGGGTTTACACGCCACCAAAGCTCACAGCACTTCCATTCTACTTCTCCAG
GGTCGGCACATTGAGTATAGACATATGGCTGCAAGTTTGGCTTCAAAATG
GTCTCGAGTAATACTAGTCGGACGGTCACTTCTTGGAGGCCTTGGAAACA
ACTTGTCTGGTTTGTCGAGCACATCTCATGAGATGGCATCCAGCAATTTC
TTGTCTCAGCAGCAAAGGACTTTCATACAGATGAGGACTGTTCTAAAAGT
TGTGGACAACTCTGGGGCAAAAACAGTGATGTGCATACAACCTCTAAAAG
GGAGGAAAGTGGCGAGATTGGGGGACACAATTGTTGCATCGGTAAAGGAA
GCTATGCCCACTGGTAAAGTGAAGAAAGGACAAGTTGTGCATG
back to top