CX289307

Overview
NameCX289307
Unique NameCX289307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_CAUCR (50S ribosomal protein L14 OS=Caulobacter crescentus GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.879e-11
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPL--KGRKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L+V DNSGA+ VMCI+ L   GR+ A +GD IV SVKEA+P G+VKKG V+
Sbjct:    2 IQMQTNLEVADNSGARRVMCIKVLGGAGRRYASVGDVIVVSVKEAIPRGRVKKGDVL 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_CAUCN (50S ribosomal protein L14 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.879e-11
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPL--KGRKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L+V DNSGA+ VMCI+ L   GR+ A +GD IV SVKEA+P G+VKKG V+
Sbjct:    2 IQMQTNLEVADNSGARRVMCIKVLGGAGRRYASVGDVIVVSVKEAIPRGRVKKGDVL 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_CAMLR (50S ribosomal protein L14 OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.879e-11
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ  T L V DNSGAK +MCI+ L G  R+ A +GD IVASVK+A+P GKVKKGQVV
Sbjct:    2 IQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVKKALPNGKVKKGQVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_CAMJR (50S ribosomal protein L14 OS=Campylobacter jejuni (strain RM1221) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.879e-11
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ  T L V DNSGAK +MCI+ L G  R+ A +GD IVASVK+A+P GKVKKGQVV
Sbjct:    2 IQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVKKALPNGKVKKGQVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_CAMJJ (50S ribosomal protein L14 OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.879e-11
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ  T L V DNSGAK +MCI+ L G  R+ A +GD IVASVK+A+P GKVKKGQVV
Sbjct:    2 IQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVKKALPNGKVKKGQVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_CAMJE (50S ribosomal protein L14 OS=Campylobacter jejuni GN=rplN PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.879e-11
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ  T L V DNSGAK +MCI+ L G  R+ A +GD IVASVK+A+P GKVKKGQVV
Sbjct:    2 IQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVKKALPNGKVKKGQVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_CAMJD (50S ribosomal protein L14 OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.879e-11
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ  T L V DNSGAK +MCI+ L G  R+ A +GD IVASVK+A+P GKVKKGQVV
Sbjct:    2 IQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVKKALPNGKVKKGQVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_CAMJ8 (50S ribosomal protein L14 OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.879e-11
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ  T L V DNSGAK +MCI+ L G  R+ A +GD IVASVK+A+P GKVKKGQVV
Sbjct:    2 IQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVKKALPNGKVKKGQVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_AZOC5 (50S ribosomal protein L14 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplN PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.879e-11
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  RK A +GD IV SVKEA+P G+VKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRKYAHVGDIIVVSVKEAIPRGRVKKGDVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_ANASK (50S ribosomal protein L14 OS=Anaeromyxobacter sp. (strain K) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.879e-11
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQV 436
            IQ +T+L V DNSGAK VMCI+ L G  RK A +GD IV S+KEA+P  KVKKG+V
Sbjct:    2 IQQQTMLDVADNSGAKRVMCIKVLGGTRRKYASIGDVIVVSIKEAIPQAKVKKGEV 57          
The following BLAST results are available for this feature:
BLAST of CX289307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RL14_CAUCR3.879e-1161.4050S ribosomal protein L14 OS=Caulobacter crescentu... [more]
RL14_CAUCN3.879e-1161.4050S ribosomal protein L14 OS=Caulobacter crescentu... [more]
RL14_CAMLR3.879e-1164.9150S ribosomal protein L14 OS=Campylobacter lari (s... [more]
RL14_CAMJR3.879e-1164.9150S ribosomal protein L14 OS=Campylobacter jejuni ... [more]
RL14_CAMJJ3.879e-1164.9150S ribosomal protein L14 OS=Campylobacter jejuni ... [more]
RL14_CAMJE3.879e-1164.9150S ribosomal protein L14 OS=Campylobacter jejuni ... [more]
RL14_CAMJD3.879e-1164.9150S ribosomal protein L14 OS=Campylobacter jejuni ... [more]
RL14_CAMJ83.879e-1164.9150S ribosomal protein L14 OS=Campylobacter jejuni ... [more]
RL14_AZOC53.879e-1163.1650S ribosomal protein L14 OS=Azorhizobium caulinod... [more]
RL14_ANASK3.879e-1162.5050S ribosomal protein L14 OS=Anaeromyxobacter sp. ... [more]

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Properties
Property NameValue
Genbank descriptionC02011E07SK IF1 Citrus clementina cDNA clone C02011E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289307 ID=CX289307; Name=CX289307; organism=Citrus clementina; type=EST; length=443bp
TGAAATAATAGGTTGGGGCTACTTAGCTCCATTCGAACCTAACGCCAACT
AGGGTTTACACGCCACCAAAGCTCACAGCACTTCCATTCTACTTCTCCAG
GGTCGGCACATTGAGTATAGACATATGGCTGCAAGTTTGGCTTCAAAATG
GTCTCGAGTAATACTAGTCGGACGGTCACTTCTTGGAGGCCTTGGAAACA
ACTTGTCTGGTTTGTCGAGCACATCTCATGAGATGGCATCCAGCAATTTC
TTGTCTCAGCAGCAAAGGACTTTCATACAGATGAGGACTGTTCTAAAAGT
TGTGGACAACTCTGGGGCAAAAACAGTGATGTGCATACAACCTCTAAAAG
GGAGGAAAGTGGCGAGATTGGGGGACACAATTGTTGCATCGGTAAAGGAA
GCTATGCCCACTGGTAAAGTGAAGAAAGGACAAGTTGTGCATG
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