CX289307

Overview
NameCX289307
Unique NameCX289307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_ANADE (50S ribosomal protein L14 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.879e-11
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQV 436
            IQ +T+L V DNSGAK VMCI+ L G  RK A +GD IV S+KEA+P  KVKKG+V
Sbjct:    2 IQQQTMLDVADNSGAKRVMCIKVLGGTRRKYASIGDVIVVSIKEAIPQAKVKKGEV 57          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_ANAD2 (50S ribosomal protein L14 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.879e-11
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQV 436
            IQ +T+L V DNSGAK VMCI+ L G  RK A +GD IV S+KEA+P  KVKKG+V
Sbjct:    2 IQQQTMLDVADNSGAKRVMCIKVLGGTRRKYASIGDVIVVSIKEAIPQAKVKKGEV 57          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_AGRRK (50S ribosomal protein L14 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.879e-11
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  RK A +GD IV S+KEA+P G+VKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRKYASIGDVIVVSIKEAIPRGRVKKGDVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_SINMW (50S ribosomal protein L14 OS=Sinorhizobium medicae (strain WSM419) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  RK A +GD IV S+KEA+P G+VKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRKYASIGDIIVVSIKEAIPRGRVKKGDVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RHOPS (50S ribosomal protein L14 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  R+ A +GD IV S+KEA+P GKVKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRRYATVGDVIVVSIKEAIPRGKVKKGDVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RHOPB (50S ribosomal protein L14 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  R+ A +GD IV S+KEA+P GKVKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRRYATVGDVIVVSIKEAIPRGKVKKGDVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RHOP5 (50S ribosomal protein L14 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  R+ A +GD IV S+KEA+P GKVKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRRYATVGDVIVVSIKEAIPRGKVKKGDVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RHOP2 (50S ribosomal protein L14 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  R+ A +GD IV S+KEA+P GKVKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRRYATVGDVIVVSIKEAIPRGKVKKGDVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RHISN (50S ribosomal protein L14 OS=Rhizobium sp. (strain NGR234) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  RK A +GD IV S+KEA+P G+VKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRKYASIGDIIVVSIKEAIPRGRVKKGDVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RHIME (50S ribosomal protein L14 OS=Rhizobium meliloti GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  RK A +GD IV S+KEA+P G+VKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRKYASIGDIIVVSIKEAIPRGRVKKGDVM 58          
The following BLAST results are available for this feature:
BLAST of CX289307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RL14_ANADE3.879e-1162.5050S ribosomal protein L14 OS=Anaeromyxobacter deha... [more]
RL14_ANAD23.879e-1162.5050S ribosomal protein L14 OS=Anaeromyxobacter deha... [more]
RL14_AGRRK3.879e-1161.4050S ribosomal protein L14 OS=Agrobacterium radioba... [more]
RL14_SINMW5.067e-1161.4050S ribosomal protein L14 OS=Sinorhizobium medicae... [more]
RL14_RHOPS5.067e-1161.4050S ribosomal protein L14 OS=Rhodopseudomonas palu... [more]
RL14_RHOPB5.067e-1161.4050S ribosomal protein L14 OS=Rhodopseudomonas palu... [more]
RL14_RHOP55.067e-1161.4050S ribosomal protein L14 OS=Rhodopseudomonas palu... [more]
RL14_RHOP25.067e-1161.4050S ribosomal protein L14 OS=Rhodopseudomonas palu... [more]
RL14_RHISN5.067e-1161.4050S ribosomal protein L14 OS=Rhizobium sp. (strain... [more]
RL14_RHIME5.067e-1161.4050S ribosomal protein L14 OS=Rhizobium meliloti GN... [more]

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Properties
Property NameValue
Genbank descriptionC02011E07SK IF1 Citrus clementina cDNA clone C02011E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289307 ID=CX289307; Name=CX289307; organism=Citrus clementina; type=EST; length=443bp
TGAAATAATAGGTTGGGGCTACTTAGCTCCATTCGAACCTAACGCCAACT
AGGGTTTACACGCCACCAAAGCTCACAGCACTTCCATTCTACTTCTCCAG
GGTCGGCACATTGAGTATAGACATATGGCTGCAAGTTTGGCTTCAAAATG
GTCTCGAGTAATACTAGTCGGACGGTCACTTCTTGGAGGCCTTGGAAACA
ACTTGTCTGGTTTGTCGAGCACATCTCATGAGATGGCATCCAGCAATTTC
TTGTCTCAGCAGCAAAGGACTTTCATACAGATGAGGACTGTTCTAAAAGT
TGTGGACAACTCTGGGGCAAAAACAGTGATGTGCATACAACCTCTAAAAG
GGAGGAAAGTGGCGAGATTGGGGGACACAATTGTTGCATCGGTAAAGGAA
GCTATGCCCACTGGTAAAGTGAAGAAAGGACAAGTTGTGCATG
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