CX289307

Overview
NameCX289307
Unique NameCX289307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_OLICO (50S ribosomal protein L14 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  R+ A +GD IV SVKEA+P GKVKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRRYATVGDIIVVSVKEAIPRGKVKKGDVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_METRJ (50S ribosomal protein L14 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  RK A +GD IV SVKEA+P G+VKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRKYAGVGDVIVVSVKEAIPRGRVKKGDVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_MESSB (50S ribosomal protein L14 OS=Mesorhizobium sp. (strain BNC1) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  RK A +GD IV SVKEA+P G+VKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRKYASVGDIIVVSVKEAIPRGRVKKGDVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_LEGPL (50S ribosomal protein L14 OS=Legionella pneumophila (strain Lens) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+TVL+V DNSGA+ VMCI+ L G  R+ AR+GD I  SVK+A+P  KVKKG V+
Sbjct:    2 IQMQTVLEVADNSGARKVMCIKVLGGSHRRYARVGDVIKVSVKDAIPRSKVKKGAVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_LEGPH (50S ribosomal protein L14 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+TVL+V DNSGA+ VMCI+ L G  R+ AR+GD I  SVK+A+P  KVKKG V+
Sbjct:    2 IQMQTVLEVADNSGARKVMCIKVLGGSHRRYARVGDVIKVSVKDAIPRSKVKKGAVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_LEGPA (50S ribosomal protein L14 OS=Legionella pneumophila (strain Paris) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+TVL+V DNSGA+ VMCI+ L G  R+ AR+GD I  SVK+A+P  KVKKG V+
Sbjct:    2 IQMQTVLEVADNSGARKVMCIKVLGGSHRRYARVGDVIKVSVKDAIPRSKVKKGAVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_GEOMG (50S ribosomal protein L14 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T+L V DNSGA+ + CI+ L G  RK A +GD IVASV+EA+P  KVKKG VV
Sbjct:    2 IQMQTILDVADNSGARKLFCIKVLGGSKRKYAGIGDIIVASVREAIPNSKVKKGDVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_CLOK5 (50S ribosomal protein L14 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ +T+LKV DNSGAK +MCI+ L G  RK   +GD IVASVK A P G VKKG+VV
Sbjct:    2 IQQQTLLKVADNSGAKEIMCIRVLGGSKRKWGNIGDIIVASVKSATPGGVVKKGEVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_BUCCC (50S ribosomal protein L14 OS=Buchnera aphidicola subsp. Cinara cedri GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ++T+L V DNSGA+ VMCI+ L G  R+ A +GD I  ++KEA+P GKVKKG+VV
Sbjct:    2 IQVQTILNVADNSGARLVMCIKVLGGSRRRYANIGDIIKVAIKEAIPRGKVKKGEVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_BRAJA (50S ribosomal protein L14 OS=Bradyrhizobium japonicum GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  R+ A +GD IV S+KEA+P GKVKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRRYATIGDIIVVSIKEAIPRGKVKKGDVM 58          
The following BLAST results are available for this feature:
BLAST of CX289307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RL14_OLICO5.067e-1163.1650S ribosomal protein L14 OS=Oligotropha carboxido... [more]
RL14_METRJ5.067e-1163.1650S ribosomal protein L14 OS=Methylobacterium radi... [more]
RL14_MESSB5.067e-1163.1650S ribosomal protein L14 OS=Mesorhizobium sp. (st... [more]
RL14_LEGPL5.067e-1161.4050S ribosomal protein L14 OS=Legionella pneumophil... [more]
RL14_LEGPH5.067e-1161.4050S ribosomal protein L14 OS=Legionella pneumophil... [more]
RL14_LEGPA5.067e-1161.4050S ribosomal protein L14 OS=Legionella pneumophil... [more]
RL14_GEOMG5.067e-1161.4050S ribosomal protein L14 OS=Geobacter metalliredu... [more]
RL14_CLOK55.067e-1163.1650S ribosomal protein L14 OS=Clostridium kluyveri ... [more]
RL14_BUCCC5.067e-1157.8950S ribosomal protein L14 OS=Buchnera aphidicola s... [more]
RL14_BRAJA5.067e-1161.4050S ribosomal protein L14 OS=Bradyrhizobium japoni... [more]

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Properties
Property NameValue
Genbank descriptionC02011E07SK IF1 Citrus clementina cDNA clone C02011E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289307 ID=CX289307; Name=CX289307; organism=Citrus clementina; type=EST; length=443bp
TGAAATAATAGGTTGGGGCTACTTAGCTCCATTCGAACCTAACGCCAACT
AGGGTTTACACGCCACCAAAGCTCACAGCACTTCCATTCTACTTCTCCAG
GGTCGGCACATTGAGTATAGACATATGGCTGCAAGTTTGGCTTCAAAATG
GTCTCGAGTAATACTAGTCGGACGGTCACTTCTTGGAGGCCTTGGAAACA
ACTTGTCTGGTTTGTCGAGCACATCTCATGAGATGGCATCCAGCAATTTC
TTGTCTCAGCAGCAAAGGACTTTCATACAGATGAGGACTGTTCTAAAAGT
TGTGGACAACTCTGGGGCAAAAACAGTGATGTGCATACAACCTCTAAAAG
GGAGGAAAGTGGCGAGATTGGGGGACACAATTGTTGCATCGGTAAAGGAA
GCTATGCCCACTGGTAAAGTGAAGAAAGGACAAGTTGTGCATG
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