CX289307

Overview
NameCX289307
Unique NameCX289307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig239 contig Ccv1_Contig239:15..457. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_RHILO (50S ribosomal protein L14 OS=Rhizobium loti GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.617e-11
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  RK A +GD IV S+KEA+P G+VKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRKYASVGDIIVVSIKEAIPRGRVKKGDVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_NITWN (50S ribosomal protein L14 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.617e-11
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  R+ A +GD IV S+KEA+P GKVKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRRYATVGDIIVVSIKEAIPRGKVKKGDVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_NITHX (50S ribosomal protein L14 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.617e-11
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  R+ A +GD IV S+KEA+P GKVKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRRYATVGDIIVVSIKEAIPRGKVKKGDVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_METSB (50S ribosomal protein L14 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.617e-11
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  RK A +GD IV SVKEA+P G+VKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRKYAGVGDIIVVSVKEAIPRGRVKKGDVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_METS4 (50S ribosomal protein L14 OS=Methylobacterium sp. (strain 4-46) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.617e-11
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  RK A +GD IV SVKEA+P G+VKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRKYAGVGDIIVVSVKEAIPRGRVKKGDVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_METPB (50S ribosomal protein L14 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplN PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 6.617e-11
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  RK A +GD IV SVKEA+P G+VKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRKYAGVGDIIVVSVKEAIPRGRVKKGDVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_METEP (50S ribosomal protein L14 OS=Methylobacterium extorquens (strain PA1) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.617e-11
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  RK A +GD IV SVKEA+P G+VKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRKYAGVGDIIVVSVKEAIPRGRVKKGDVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_CHLAD (50S ribosomal protein L14 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.617e-11
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKGRKV--ARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ +T LKV DN+GAK +MCI+ L G +V   R+GD IVASVKEA P G+VKKG VV
Sbjct:    2 IQPQTRLKVADNTGAKEIMCIRVLGGSRVRYGRVGDIIVASVKEATPGGQVKKGDVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_BRASO (50S ribosomal protein L14 OS=Bradyrhizobium sp. (strain ORS278) GN=rplN PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 6.617e-11
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  R+ A +GD IV S+KEA+P GKVKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRRYATVGDIIVVSIKEAIPRGKVKKGDVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_BRASB (50S ribosomal protein L14 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.617e-11
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  R+ A +GD IV S+KEA+P GKVKKG V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRRYATVGDIIVVSIKEAIPRGKVKKGDVM 58          
The following BLAST results are available for this feature:
BLAST of CX289307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RL14_RHILO6.617e-1161.4050S ribosomal protein L14 OS=Rhizobium loti GN=rpl... [more]
RL14_NITWN6.617e-1161.4050S ribosomal protein L14 OS=Nitrobacter winograds... [more]
RL14_NITHX6.617e-1161.4050S ribosomal protein L14 OS=Nitrobacter hamburgen... [more]
RL14_METSB6.617e-1163.1650S ribosomal protein L14 OS=Methylocella silvestr... [more]
RL14_METS46.617e-1163.1650S ribosomal protein L14 OS=Methylobacterium sp. ... [more]
RL14_METPB6.617e-1163.1650S ribosomal protein L14 OS=Methylobacterium popu... [more]
RL14_METEP6.617e-1163.1650S ribosomal protein L14 OS=Methylobacterium exto... [more]
RL14_CHLAD6.617e-1163.1650S ribosomal protein L14 OS=Chloroflexus aggregan... [more]
RL14_BRASO6.617e-1161.4050S ribosomal protein L14 OS=Bradyrhizobium sp. (s... [more]
RL14_BRASB6.617e-1161.4050S ribosomal protein L14 OS=Bradyrhizobium sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionC02011E07SK IF1 Citrus clementina cDNA clone C02011E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289307 ID=CX289307; Name=CX289307; organism=Citrus clementina; type=EST; length=443bp
TGAAATAATAGGTTGGGGCTACTTAGCTCCATTCGAACCTAACGCCAACT
AGGGTTTACACGCCACCAAAGCTCACAGCACTTCCATTCTACTTCTCCAG
GGTCGGCACATTGAGTATAGACATATGGCTGCAAGTTTGGCTTCAAAATG
GTCTCGAGTAATACTAGTCGGACGGTCACTTCTTGGAGGCCTTGGAAACA
ACTTGTCTGGTTTGTCGAGCACATCTCATGAGATGGCATCCAGCAATTTC
TTGTCTCAGCAGCAAAGGACTTTCATACAGATGAGGACTGTTCTAAAAGT
TGTGGACAACTCTGGGGCAAAAACAGTGATGTGCATACAACCTCTAAAAG
GGAGGAAAGTGGCGAGATTGGGGGACACAATTGTTGCATCGGTAAAGGAA
GCTATGCCCACTGGTAAAGTGAAGAAAGGACAAGTTGTGCATG
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