CX289307

Overview
NameCX289307
Unique NameCX289307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_CAMFF (50S ribosomal protein L14 OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.643e-11
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ  T L V DNSGAK +MCI+ L G  R+ A LGD IV SVK+A+P GK+KKGQVV
Sbjct:    2 IQSFTRLAVADNSGAKELMCIKVLGGSKRRYASLGDIIVCSVKKALPNGKIKKGQVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_CAMC5 (50S ribosomal protein L14 OS=Campylobacter curvus (strain 525.92) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.643e-11
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ  T L V DNSGAK +MCI+ L G  R+ A LGD I+ SVK+A+P GK+KKGQVV
Sbjct:    2 IQSFTRLAVADNSGAKELMCIKVLGGSKRRYATLGDVIICSVKKALPNGKIKKGQVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_CAMC1 (50S ribosomal protein L14 OS=Campylobacter concisus (strain 13826) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.643e-11
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ  T L V DNSGAK +MCI+ L G  R+ A LGD IV SVK+A+P GK+KKGQVV
Sbjct:    2 IQSFTRLAVADNSGAKELMCIKVLGGSKRRYATLGDIIVCSVKKALPNGKIKKGQVV 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_BRUAB (50S ribosomal protein L14 OS=Brucella abortus GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.643e-11
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  R+ A +GD IV S+KEA+P G+VKKG+V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRRYASVGDIIVVSIKEAIPRGRVKKGEVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_BRUA2 (50S ribosomal protein L14 OS=Brucella abortus (strain 2308) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.643e-11
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  R+ A +GD IV S+KEA+P G+VKKG+V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRRYASVGDIIVVSIKEAIPRGRVKKGEVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_BRUA1 (50S ribosomal protein L14 OS=Brucella abortus (strain S19) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.643e-11
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQM+T L V DNSGA+ VMCI+ L G  R+ A +GD IV S+KEA+P G+VKKG+V+
Sbjct:    2 IQMQTNLDVADNSGARRVMCIKVLGGSKRRYASVGDIIVVSIKEAIPRGRVKKGEVM 58          
BLAST of CX289307 vs. ExPASy Swiss-Prot
Match: RL14_BACSK (50S ribosomal protein L14 OS=Bacillus clausii (strain KSM-K16) GN=rplN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.643e-11
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 2
Query:  275 IQMRTVLKVVDNSGAKTVMCIQPL--KGRKVARLGDTIVASVKEAMPTGKVKKGQVV 439
            IQ  + LKV DNSGA+ V+CI+ L   GRK+A +GD IV SVKEA P G VKKG VV
Sbjct:    2 IQQESRLKVADNSGAREVLCIKVLGGSGRKIANIGDVIVCSVKEATPGGVVKKGDVV 58          
The following BLAST results are available for this feature:
BLAST of CX289307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RL14_CAMFF8.643e-1163.1650S ribosomal protein L14 OS=Campylobacter fetus s... [more]
RL14_CAMC58.643e-1161.4050S ribosomal protein L14 OS=Campylobacter curvus ... [more]
RL14_CAMC18.643e-1163.1650S ribosomal protein L14 OS=Campylobacter concisu... [more]
RL14_BRUAB8.643e-1159.6550S ribosomal protein L14 OS=Brucella abortus GN=r... [more]
RL14_BRUA28.643e-1159.6550S ribosomal protein L14 OS=Brucella abortus (str... [more]
RL14_BRUA18.643e-1159.6550S ribosomal protein L14 OS=Brucella abortus (str... [more]
RL14_BACSK8.643e-1161.4050S ribosomal protein L14 OS=Bacillus clausii (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02011E07SK IF1 Citrus clementina cDNA clone C02011E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289307 ID=CX289307; Name=CX289307; organism=Citrus clementina; type=EST; length=443bp
TGAAATAATAGGTTGGGGCTACTTAGCTCCATTCGAACCTAACGCCAACT
AGGGTTTACACGCCACCAAAGCTCACAGCACTTCCATTCTACTTCTCCAG
GGTCGGCACATTGAGTATAGACATATGGCTGCAAGTTTGGCTTCAAAATG
GTCTCGAGTAATACTAGTCGGACGGTCACTTCTTGGAGGCCTTGGAAACA
ACTTGTCTGGTTTGTCGAGCACATCTCATGAGATGGCATCCAGCAATTTC
TTGTCTCAGCAGCAAAGGACTTTCATACAGATGAGGACTGTTCTAAAAGT
TGTGGACAACTCTGGGGCAAAAACAGTGATGTGCATACAACCTCTAAAAG
GGAGGAAAGTGGCGAGATTGGGGGACACAATTGTTGCATCGGTAAAGGAA
GCTATGCCCACTGGTAAAGTGAAGAAAGGACAAGTTGTGCATG
back to top