CX289311

Overview
NameCX289311
Unique NameCX289311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: HPCE_ECOLX (Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase OS=Escherichia coli GN=hpcE PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 8.006e-27
Identity = 62/143 (43.36%), Postives = 92/143 (64.34%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTP-ISSVLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K  ++  G+  T   P+ ++ +H+E EL VVIG++AR+V E  AMDYV GY V  D   R+   +     L     K +D  TP +S+++PK A+PDPHNL L   V+GE+RQ+G+T D+IF +P+LI+++S  MTL  GD+I
Sbjct:  252 KAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARNVSEADAMDYVAGYTVCNDYAIRDYLENYYRPNLR---VKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMI 391          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: HPAG_ECOLX (4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase OS=Escherichia coli GN=hpaG PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 8.006e-27
Identity = 62/143 (43.36%), Postives = 92/143 (64.34%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTP-ISSVLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K  ++  G+  T   P+ ++ +H+E EL VVIG++AR+V E  AMDYV GY V  D   R+   +     L     K +D  TP +S+++PK A+PDPHNL L   V+GE+RQ+G+T D+IF +P+LI+++S  MTL  GD+I
Sbjct:  252 KAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARNVSEADAMDYVAGYTVCNDYAIRDYLENYYRPNLR---VKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMI 391          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: UGL_BURCJ (Ureidoglycolate lyase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=BceJ2315_61450 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.493e-25
Identity = 64/143 (44.76%), Postives = 83/143 (58.04%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K TSS  G    I++P        EVEL VVIG K +DV E  A+DYV GY V  D++ RE Q      G  W   KG DTF PI   ++ +  VPDP  L+LWL +DG   Q G+T+ M+F +  LI+++S+ MTL  GDVI
Sbjct:  100 KWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGAKCKDVDEARALDYVAGYCVVNDVSEREWQIER---GGQWDKGKGFDTFGPIGPWLVTRDEVPDPQRLDLWLEIDGHRYQNGNTRTMVFTVAQLIAYLSTCMTLQPGDVI 239          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: UGL_BURM1 (Ureidoglycolate lyase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=Bmul_3283 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.786e-25
Identity = 65/143 (45.45%), Postives = 83/143 (58.04%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K TSS  G    I++P        EVEL VVIG   +DV E  A+DYV GY V  D++ RE Q      G  W   KG DTF PI   ++ +  VPDP +L+LWL VDG   Q G+T+ M+F +  LI+++SS MTL  GDVI
Sbjct:  100 KWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGAPCKDVDEARALDYVAGYCVVNDVSEREWQIER---GGQWDKGKGFDTFGPIGPWLVTRDEVPDPQSLDLWLEVDGHRYQNGNTRTMVFTVAQLIAYLSSCMTLQPGDVI 239          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: UGL_BURCH (Ureidoglycolate lyase OS=Burkholderia cenocepacia (strain HI2424) GN=Bcen2424_5521 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.786e-25
Identity = 63/143 (44.06%), Postives = 83/143 (58.04%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K TSS  G    I++P        EVEL VVIG K +DV E  A+DYV GY V  D++ RE Q      G  W   KG DTF PI   ++ +  VPDP  L+LWL +DG   Q G+T+ M+F +  L++++S+ MTL  GDVI
Sbjct:  100 KWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGAKCKDVDEARALDYVAGYCVVNDVSEREWQIER---GGQWDKGKGFDTFGPIGPWLVTRDEVPDPQRLDLWLEIDGHRYQNGNTRTMVFTVAQLVAYLSTCMTLQPGDVI 239          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: UGL_BURCC (Ureidoglycolate lyase OS=Burkholderia cenocepacia (strain MC0-3) GN=Bcenmc03_4750 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.786e-25
Identity = 63/143 (44.06%), Postives = 83/143 (58.04%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K TSS  G    I++P        EVEL VVIG K +DV E  A+DYV GY V  D++ RE Q      G  W   KG DTF PI   ++ +  VPDP  L+LWL +DG   Q G+T+ M+F +  L++++S+ MTL  GDVI
Sbjct:  100 KWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGAKCKDVDEARALDYVAGYCVVNDVSEREWQIER---GGQWDKGKGFDTFGPIGPWLVTRDEVPDPQRLDLWLEIDGHRYQNGNTRTMVFTVAQLVAYLSTCMTLQPGDVI 239          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: UGL_BURCA (Ureidoglycolate lyase OS=Burkholderia cenocepacia (strain AU 1054) GN=Bcen_5340 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.786e-25
Identity = 63/143 (44.06%), Postives = 83/143 (58.04%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K TSS  G    I++P        EVEL VVIG K +DV E  A+DYV GY V  D++ RE Q      G  W   KG DTF PI   ++ +  VPDP  L+LWL +DG   Q G+T+ M+F +  L++++S+ MTL  GDVI
Sbjct:  100 KWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGAKCKDVDEARALDYVAGYCVVNDVSEREWQIER---GGQWDKGKGFDTFGPIGPWLVTRDEVPDPQRLDLWLEIDGHRYQNGNTRTMVFTVAQLVAYLSTCMTLQPGDVI 239          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: YCGM_ECOLI (Uncharacterized protein ycgM OS=Escherichia coli (strain K12) GN=ycgM PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.278e-24
Identity = 61/144 (42.36%), Postives = 82/144 (56.94%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVLPKSA-VPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVIL 429
            KP ++       + +P    S+HHEVELAV+IG   R   E      + GY VALD+T R++Q   K AG PW  AK  D   P+S  +P +    DP N  L L+V+GE RQ+G+T DMI  I  LI+++S   TL  GDV+L
Sbjct:   46 KPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDLTLRDVQGKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKFFTLKAGDVVL 189          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: UGL_BURS3 (Ureidoglycolate lyase OS=Burkholderia sp. (strain 383) GN=Bcep18194_B0137 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.669e-24
Identity = 64/143 (44.76%), Postives = 82/143 (57.34%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K TSS  G    I++P        EVEL VVIG   +DV E  A+DYV GY V  D++ RE Q      G  W   KG DTF PI   ++ +  VPDP  L+LWL +DG   Q G+T+ M+F +  LI+++SS MTL  GDVI
Sbjct:  100 KWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGATCKDVDEARALDYVAGYCVVNDVSEREWQIER---GGQWDKGKGFDTFGPIGPWLVTRDEVPDPQRLDLWLEIDGHRYQNGNTRTMVFTVAQLIAYLSSCMTLQPGDVI 239          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: UGL_BURCM (Ureidoglycolate lyase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=Bamb_4846 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.719e-24
Identity = 63/143 (44.06%), Postives = 82/143 (57.34%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K TSS  G    I++P        EVEL VVIG   +DV E  A+DYV GY V  D++ RE Q      G  W   KG DTF PI   ++ +  VPDP  L+LWL VDG   Q G+T+ M+F +  L++++S+ MTL  GDVI
Sbjct:  100 KWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGTTCKDVDEARALDYVAGYCVVNDVSEREWQIER---GGQWDKGKGFDTFGPIGPWLVTRDEVPDPQRLDLWLEVDGHRYQNGNTRTMVFTVAQLVAYLSTCMTLQPGDVI 239          
The following BLAST results are available for this feature:
BLAST of CX289311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
HPCE_ECOLX8.006e-2743.36Homoprotocatechuate catabolism bifunctional isomer... [more]
HPAG_ECOLX8.006e-2743.364-hydroxyphenylacetate degradation bifunctional is... [more]
UGL_BURCJ7.493e-2544.76Ureidoglycolate lyase OS=Burkholderia cepacia (str... [more]
UGL_BURM19.786e-2545.45Ureidoglycolate lyase OS=Burkholderia multivorans ... [more]
UGL_BURCH9.786e-2544.06Ureidoglycolate lyase OS=Burkholderia cenocepacia ... [more]
UGL_BURCC9.786e-2544.06Ureidoglycolate lyase OS=Burkholderia cenocepacia ... [more]
UGL_BURCA9.786e-2544.06Ureidoglycolate lyase OS=Burkholderia cenocepacia ... [more]
YCGM_ECOLI1.278e-2442.36Uncharacterized protein ycgM OS=Escherichia coli (... [more]
UGL_BURS31.669e-2444.76Ureidoglycolate lyase OS=Burkholderia sp. (strain ... [more]
UGL_BURCM3.719e-2444.06Ureidoglycolate lyase OS=Burkholderia ambifaria (s... [more]

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Properties
Property NameValue
Genbank descriptionC02011E11SK IF1 Citrus clementina cDNA clone C02011E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289311 ID=CX289311; Name=CX289311; organism=Citrus clementina; type=EST; length=430bp
AAACCGACGTCGTCTTATTTAGGAAACGGAGGGACCATCGAGGTACCTCA
TCCCCTGGATTCGCTTCATCATGAAGTGGAGCTTGCAGTCGTGATCGGAC
AGAAAGCTCGAGATGTGCCTGAAACCACTGCCATGGACTATGTTGGAGGC
TATGCAGTGGCGCTTGATATGACTGCAAGGGAAATCCAATCTTCTGCCAA
GTCTGCAGGTCTTCCGTGGACAGTGGCTAAAGGGCAGGACACCTTCACAC
CAATTAGCTCTGTCCTACCAAAGTCAGCAGTGCCTGACCCTCACAACTTG
GAACTATGGTTAACGGTTGATGGAGAGATTCGACAGAAAGGCTCCACTAA
GGATATGATTTTTATGATACCATATCTAATTAGCCACATAAGTTCAATTA
TGACACTTTTTGAAGGAGATGTCATATTAA
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