CX289311

Overview
NameCX289311
Unique NameCX289311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: UGL_BURA4 (Ureidoglycolate lyase OS=Burkholderia ambifaria (strain MC40-6) GN=BamMC406_5393 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.082e-23
Identity = 61/143 (42.66%), Postives = 82/143 (57.34%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K TSS  G    I++P        EVEL VVIG   +DV E  A+DYV GY V  D++ RE Q      G  W   KG DTF PI   ++ +  VPDP  ++LWL +DG   Q G+T+ M+F +  L++++S+ MTL  GDVI
Sbjct:  100 KWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGTTCKDVDEARALDYVAGYCVVNDVSEREWQIER---GGQWDKGKGFDTFGPIGPWLVTRDEVPDPQRVDLWLEIDGHRYQNGNTRTMVFTVAQLVAYLSTCMTLQPGDVI 239          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: HPAG_SALDU (4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase OS=Salmonella dublin GN=hpaG PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.410e-23
Identity = 59/128 (46.09%), Postives = 80/128 (62.50%), Query Frame = 1
Query:   46 PHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            P+ ++ +H+E EL VVIG+ AR V E  AM+YV GY V  D   R+   +     L     K +D  TPI   ++ K AV DPHNL L   V+GE+RQ+G+T D+IF IP+LIS++S  MTL  GD+I
Sbjct:  267 PNNVEYMHYEAELVVVIGKTARKVSEAEAMEYVAGYTVCNDYAIRDYLENYYRPNLR---VKSRDGLTPIGPWIVDKEAVSDPHNLTLRTFVNGELRQEGTTADLIFSIPFLISYLSEFMTLQPGDMI 391          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: Y1656_METJA (Uncharacterized protein MJ1656 OS=Methanocaldococcus jannaschii GN=MJ1656 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.148e-23
Identity = 60/142 (42.25%), Postives = 87/142 (61.27%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            KPTS+ + N   I  P     + +EVELA+VIG+K +++ +  A DY+ GY +  D+TAR++Q         WT AK  DTF PI   + K    DP NL +   V+GEI+QK +TK+MIF +  L+  ++SIMTL+ GD+I
Sbjct:   67 KPTSAIIYNEDYIIRPRISKRVDYEVELAIVIGKKCKNIKKDEANDYIMGYTILNDVTARDLQQKDGQ----WTRAKSFDTFCPIGPRIVKDI--DPMNLNIECRVNGEIKQKSNTKNMIFDVYELVEFVASIMTLYPGDII 202          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: Y2225_ARCFU (Uncharacterized protein AF_2225 OS=Archaeoglobus fulgidus GN=AF_2225 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.256e-21
Identity = 58/142 (40.85%), Postives = 87/142 (61.27%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            KP+++ +G+   I +P     + +E ELAVVI +  R+VPET A DY+ GY    D+TAR++Q  AK     WT AK  DTF P+   +  + + DP  L +   V+G++ QK +T ++IF +  L+S +SS+MTL  GDVI
Sbjct:   73 KPSTAVIGHDDCIILPQISQRVDYEGELAVVIAEDCRNVPETNAADYILGYTCFNDVTARDLQ--AKDG--QWTRAKSFDTFAPLGPYI--AEIDDPSKLGIQTRVNGKVVQKSNTSNLIFDVFQLVSFVSSVMTLKAGDVI 208          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: FAH2A_HUMAN (Fumarylacetoacetate hydrolase domain-containing protein 2A OS=Homo sapiens GN=FAHD2A PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.256e-21
Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVL-PKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVIL 429
            K  SS +G    + +P     +  EVELAVVIG+K + +  T AM +V G+ VA D++AR+ Q   +  G  W + K  DTF P+   L  K +V DPHNL++   V+GE+ Q G+T  M+F    LI+ +S  +T + GDVIL
Sbjct:  135 KFASSIVGPYDEVVLPPQSQEVDWEVELAVVIGKKGKHIKATDAMAHVAGFTVAHDVSARDWQM--RRNGKQWLLGKTFDTFCPLGPALVTKDSVADPHNLKICCRVNGEVVQSGNTNQMVFKTEDLIAWVSQFVTFYPGDVIL 276          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: FAHD2_PONAB (Fumarylacetoacetate hydrolase domain-containing protein 2 OS=Pongo abelii GN=FAHD2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.462e-20
Identity = 57/144 (39.58%), Postives = 83/144 (57.64%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVL-PKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVIL 429
            K  SS +G    + +P     +  EVELAVVIG+K + +  T AM +V G+ VA D++AR+ Q   +  G  W + K  DTF P+   L  K +V DPHNL++   V+GE+ Q  +T  M+F    LI+ +S  +T + GDVIL
Sbjct:  135 KFASSIVGPYDEVVLPPQSQEVDWEVELAVVIGKKGKHIKATDAMAHVAGFTVAHDVSARDWQM--RRNGKQWLLGKTFDTFCPLGPALVTKDSVADPHNLKICCRVNGELVQSSNTNQMVFKTEDLIAWVSQFVTFYPGDVIL 276          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: FAHD2_MOUSE (Fumarylacetoacetate hydrolase domain-containing protein 2A OS=Mus musculus GN=Fahd2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.910e-20
Identity = 55/144 (38.19%), Postives = 83/144 (57.64%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVL-PKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVIL 429
            K +SS +G    I +P     +  EVE+AVVIG+K + +  T  M +V G+ VA D++AR+ Q      G  W + K  DTF P+   L  K  + DPHNL++   V+GE+ Q  +T  M+F   YLI+ +S  +TL+ GD++L
Sbjct:  135 KFSSSIVGPYDEIILPPESKEVDWEVEMAVVIGKKGKHIKATDVMAHVAGFTVAHDVSARDWQMRN---GKQWLLGKTFDTFCPLGPALVTKDTIADPHNLKICCRVNGEVVQSSNTNQMVFKTEYLIAWVSQFVTLYPGDLLL 275          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: FAHD2_BOVIN (Fumarylacetoacetate hydrolase domain-containing protein 2 OS=Bos taurus GN=FAHD2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.910e-20
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVL-PKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVIL 429
            K  S+ +G    I +P     +  EVELAVVIG++ + +  T AM +V G+ VA D++AR+ Q      G  W + K  DTF P+   L  K +V DPHNL++   V+GE+ Q  +T  M+F    LI+ +S  +TL+ GD+IL
Sbjct:  135 KFASAIVGPYDNIILPPESQEVDWEVELAVVIGKRGKYIKATDAMAHVAGFTVAHDVSARDWQMGRN--GKQWLLGKTFDTFCPLGPALVTKDSVADPHNLKICCRVNGELMQSSNTNQMVFKTEELITWVSQFVTLYPGDIIL 276          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: FMP41_YEAST (Uncharacterized mitochondrial hydrolase FMP41 OS=Saccharomyces cerevisiae GN=FMP41 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.494e-20
Identity = 53/143 (37.06%), Postives = 88/143 (61.54%), Query Frame = 1
Query:   25 NGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETT---AMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVLPKSAVPD-PHNLE----LWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVIL 429
            N G I +P  +  +HHE+ELA+++ +   +V +       D + G A+ALD+TAR +Q  AK  GLPWT++KG DTF PIS+++ +        NL+    +  +V+G++RQ G T  M+  +  ++ HIS++++L  GD+IL
Sbjct:   72 NPGPIFIPRGV-KVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLMLHPLHKILQHISTMISLEPGDIIL 213          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: FAHD2_XENLA (Fumarylacetoacetate hydrolase domain-containing protein 2 OS=Xenopus laevis GN=fahd2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.494e-20
Identity = 56/144 (38.89%), Postives = 81/144 (56.25%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPIS-SVLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVIL 429
            K  SS +G    I +P     +  E ELA VIG+K +++ E  AMD+V GY VA D++AR+ Q   K  G  W + K  DTF P+  +++ K  + DPHNL +   V+G++ Q  +T  M+F    LI+  S  +TL  GDV L
Sbjct:  140 KFASSIVGPSDPIRIPEESQEVDWEAELAFVIGKKGKNIKEEDAMDHVVGYTVAHDVSARDWQ--MKKNGKQWLLGKTFDTFCPLGPALVTKDVISDPHNLGIRCRVNGDLVQNSNTNQMVFKTEALIAWASKFVTLNPGDVFL 281          
The following BLAST results are available for this feature:
BLAST of CX289311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
UGL_BURA41.082e-2342.66Ureidoglycolate lyase OS=Burkholderia ambifaria (s... [more]
HPAG_SALDU2.410e-2346.094-hydroxyphenylacetate degradation bifunctional is... [more]
Y1656_METJA3.148e-2342.25Uncharacterized protein MJ1656 OS=Methanocaldococc... [more]
Y2225_ARCFU2.256e-2140.85Uncharacterized protein AF_2225 OS=Archaeoglobus f... [more]
FAH2A_HUMAN2.256e-2140.28Fumarylacetoacetate hydrolase domain-containing pr... [more]
FAHD2_PONAB1.462e-2039.58Fumarylacetoacetate hydrolase domain-containing pr... [more]
FAHD2_MOUSE1.910e-2038.19Fumarylacetoacetate hydrolase domain-containing pr... [more]
FAHD2_BOVIN1.910e-2038.89Fumarylacetoacetate hydrolase domain-containing pr... [more]
FMP41_YEAST2.494e-2037.06Uncharacterized mitochondrial hydrolase FMP41 OS=S... [more]
FAHD2_XENLA2.494e-2038.89Fumarylacetoacetate hydrolase domain-containing pr... [more]

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Properties
Property NameValue
Genbank descriptionC02011E11SK IF1 Citrus clementina cDNA clone C02011E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289311 ID=CX289311; Name=CX289311; organism=Citrus clementina; type=EST; length=430bp
AAACCGACGTCGTCTTATTTAGGAAACGGAGGGACCATCGAGGTACCTCA
TCCCCTGGATTCGCTTCATCATGAAGTGGAGCTTGCAGTCGTGATCGGAC
AGAAAGCTCGAGATGTGCCTGAAACCACTGCCATGGACTATGTTGGAGGC
TATGCAGTGGCGCTTGATATGACTGCAAGGGAAATCCAATCTTCTGCCAA
GTCTGCAGGTCTTCCGTGGACAGTGGCTAAAGGGCAGGACACCTTCACAC
CAATTAGCTCTGTCCTACCAAAGTCAGCAGTGCCTGACCCTCACAACTTG
GAACTATGGTTAACGGTTGATGGAGAGATTCGACAGAAAGGCTCCACTAA
GGATATGATTTTTATGATACCATATCTAATTAGCCACATAAGTTCAATTA
TGACACTTTTTGAAGGAGATGTCATATTAA
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