CX289311

Overview
NameCX289311
Unique NameCX289311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: FAHD2_RAT (Fumarylacetoacetate hydrolase domain-containing protein 2 OS=Rattus norvegicus GN=Fahd2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.494e-20
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVL-PKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVIL 429
            K +SS +G   +I +P     +  EVE+AVVIG+K + +  T  M YV G+ VA D++AR+ Q      G  W + K  DTF P+   L  K  + DPHNL++   V+GEI Q  +T  M+F    LI+ +S  +TL+ GD++L
Sbjct:  135 KFSSSIVGPYDSIILPPESKEVDWEVEMAVVIGKKGKHIKATDVMAYVAGFTVAHDVSARDWQMRN---GKQWLLGKTFDTFCPLGPALVTKDTIADPHNLKISCRVNGEIVQSSNTNQMVFKTEDLIAWVSQFVTLYPGDILL 275          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: FAH2B_HUMAN (Fumarylacetoacetate hydrolase domain-containing protein 2B OS=Homo sapiens GN=FAHD2B PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.255e-20
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVL-PKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVIL 429
            K  SS +G    + +P     +  EVELAVVIG+K + +  T AM +V G+ VA D++AR+  +  +  G  W + K  DTF P+   L  K +V DPHNL++   V+GE+ Q  +T  M+F    LI+ +S  +T + GDVIL
Sbjct:  135 KFASSIVGPYDEVVLPPQSQEVDWEVELAVVIGKKGKHIKATDAMAHVAGFTVAHDVSARDWLT--RRNGKQWLLGKTFDTFCPLGPALVTKDSVADPHNLKICCRVNGEVVQSSNTNQMVFKTEDLIAWVSQFVTFYPGDVIL 276          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: FAHD2_DICDI (Fumarylacetoacetate hydrolase domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=fahd2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.335e-18
Identity = 52/144 (36.11%), Postives = 82/144 (56.94%), Query Frame = 1
Query:   22 GNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPIS---------SVLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            G   +I  P   D + +EVEL VVIG++A++V E+ A+ YV GY V  D++AR+ Q    ++   W + K  DTF PI          + L      DP+NL +  T++G++ Q  +TK+ IF I  ++S++S + TL  GD+I
Sbjct:  124 GPNDSIIKPVESDEVDYEVELVVVIGKQAKNVSESDALQYVAGYTVGNDVSARDWQLRKNNS--QWLLGKTFDTFAPIGPSIVINPEVAALSDDTYFDPNNLSIKCTLNGQVVQNSTTKEFIFNIQTVVSYLSKLFTLNPGDII 265          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: YISK_BACSU (Uncharacterized protein yisK OS=Bacillus subtilis GN=yisK PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.201e-18
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = 1
Query:   22 GNGGTIEVPHPLDS-LHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVLP-KSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            G+G  ++    + S L +E ELAVVIG+    + +  A D+V GY +  D+TAR++Q   K     + + K  DT  P+  VL  KS++ +P  L++   V+GE+RQ GS  DMIF IP LI  +S  MTL  GD+I
Sbjct:  130 GHGDIVKSHEEVTSQLDYEGELAVVIGKSGTRISKEDAYDHVFGYTIVNDITARDLQKRHKQ----FFIGKSLDTTCPMGPVLVHKSSIQEPERLKVETRVNGELRQSGSASDMIFSIPELIETLSKGMTLEAGDII 262          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: Y973_STAAC (Uncharacterized protein SACOL0973 OS=Staphylococcus aureus (strain COL) GN=SACOL0973 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K  SS  G+  TI     + D L +E EL +VIG+    +P+  A+DYV GY +  D+T R+ QS    A L  ++  G     P+   ++ K  +P P N+ +   V+ EIRQ G+T +MI  I  LI  IS  + L  GD+I
Sbjct:  121 KAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGG----CPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDII 260          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: Y968_STAAM (Uncharacterized protein SAV0968 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV0968 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K  SS  G+  TI     + D L +E EL +VIG+    +P+  A+DYV GY +  D+T R+ QS    A L  ++  G     P+   ++ K  +P P N+ +   V+ EIRQ G+T +MI  I  LI  IS  + L  GD+I
Sbjct:  121 KAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGG----CPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDII 260          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: Y906_STAA8 (Uncharacterized protein SAOUHSC_00906 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_00906 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K  SS  G+  TI     + D L +E EL +VIG+    +P+  A+DYV GY +  D+T R+ QS    A L  ++  G     P+   ++ K  +P P N+ +   V+ EIRQ G+T +MI  I  LI  IS  + L  GD+I
Sbjct:  121 KAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGG----CPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDII 260          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: Y871_STAA3 (Uncharacterized protein SAUSA300_0871 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_0871 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K  SS  G+  TI     + D L +E EL +VIG+    +P+  A+DYV GY +  D+T R+ QS    A L  ++  G     P+   ++ K  +P P N+ +   V+ EIRQ G+T +MI  I  LI  IS  + L  GD+I
Sbjct:  121 KAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGG----CPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDII 260          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: Y850_STAAW (Uncharacterized protein MW0850 OS=Staphylococcus aureus (strain MW2) GN=MW0850 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K  SS  G+  TI     + D L +E EL +VIG+    +P+  A+DYV GY +  D+T R+ QS    A L  ++  G     P+   ++ K  +P P N+ +   V+ EIRQ G+T +MI  I  LI  IS  + L  GD+I
Sbjct:  121 KAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGG----CPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDII 260          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: Y838_STAAS (Uncharacterized protein SAS0838 OS=Staphylococcus aureus (strain MSSA476) GN=SAS0838 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K  SS  G+  TI     + D L +E EL +VIG+    +P+  A+DYV GY +  D+T R+ QS    A L  ++  G     P+   ++ K  +P P N+ +   V+ EIRQ G+T +MI  I  LI  IS  + L  GD+I
Sbjct:  121 KAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGG----CPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDII 260          
The following BLAST results are available for this feature:
BLAST of CX289311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
FAHD2_RAT2.494e-2038.89Fumarylacetoacetate hydrolase domain-containing pr... [more]
FAH2B_HUMAN4.255e-2038.89Fumarylacetoacetate hydrolase domain-containing pr... [more]
FAHD2_DICDI2.335e-1836.11Fumarylacetoacetate hydrolase domain-containing pr... [more]
YISK_BACSU5.201e-1840.15Uncharacterized protein yisK OS=Bacillus subtilis ... [more]
Y973_STAAC1.416e-1536.11Uncharacterized protein SACOL0973 OS=Staphylococcu... [more]
Y968_STAAM1.416e-1536.11Uncharacterized protein SAV0968 OS=Staphylococcus ... [more]
Y906_STAA81.416e-1536.11Uncharacterized protein SAOUHSC_00906 OS=Staphyloc... [more]
Y871_STAA31.416e-1536.11Uncharacterized protein SAUSA300_0871 OS=Staphyloc... [more]
Y850_STAAW1.416e-1536.11Uncharacterized protein MW0850 OS=Staphylococcus a... [more]
Y838_STAAS1.416e-1536.11Uncharacterized protein SAS0838 OS=Staphylococcus ... [more]

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Properties
Property NameValue
Genbank descriptionC02011E11SK IF1 Citrus clementina cDNA clone C02011E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289311 ID=CX289311; Name=CX289311; organism=Citrus clementina; type=EST; length=430bp
AAACCGACGTCGTCTTATTTAGGAAACGGAGGGACCATCGAGGTACCTCA
TCCCCTGGATTCGCTTCATCATGAAGTGGAGCTTGCAGTCGTGATCGGAC
AGAAAGCTCGAGATGTGCCTGAAACCACTGCCATGGACTATGTTGGAGGC
TATGCAGTGGCGCTTGATATGACTGCAAGGGAAATCCAATCTTCTGCCAA
GTCTGCAGGTCTTCCGTGGACAGTGGCTAAAGGGCAGGACACCTTCACAC
CAATTAGCTCTGTCCTACCAAAGTCAGCAGTGCCTGACCCTCACAACTTG
GAACTATGGTTAACGGTTGATGGAGAGATTCGACAGAAAGGCTCCACTAA
GGATATGATTTTTATGATACCATATCTAATTAGCCACATAAGTTCAATTA
TGACACTTTTTGAAGGAGATGTCATATTAA
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