CX289311

Overview
NameCX289311
Unique NameCX289311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: Y837_STAAB (Uncharacterized protein SAB0837 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB0837 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K  SS  G+  TI     + D L +E EL +VIG+    +P+  A+DYV GY +  D+T R+ QS    A L  ++  G     P+   ++ K  +P P N+ +   V+ EIRQ G+T +MI  I  LI  IS  + L  GD+I
Sbjct:  121 KAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGG----CPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDII 260          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: Y829_STAAN (Uncharacterized protein SA0829 OS=Staphylococcus aureus (strain N315) GN=SA0829 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K  SS  G+  TI     + D L +E EL +VIG+    +P+  A+DYV GY +  D+T R+ QS    A L  ++  G     P+   ++ K  +P P N+ +   V+ EIRQ G+T +MI  I  LI  IS  + L  GD+I
Sbjct:  121 KAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGG----CPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDII 260          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: Y930_STAAR (Uncharacterized protein SAR0930 OS=Staphylococcus aureus (strain MRSA252) GN=SAR0930 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.029e-15
Identity = 51/144 (35.42%), Postives = 75/144 (52.08%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K  SS  G+   I     + D L +E EL +VIG+    +P+  A+DYV GY +  D+T R+ QS    A L  ++  G     P+   ++ K  +P P N+ +   V+ EIRQ G+T +MI  I  LI  IS  + L  GD+I
Sbjct:  121 KAASSLTGDNAKIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGG----CPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDII 260          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: Y1806_STAS1 (Uncharacterized protein SSP1806 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1806 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.566e-14
Identity = 49/144 (34.03%), Postives = 76/144 (52.78%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K  SS  G+  TI     + D L +E EL +VIG+    +P+  A+DYV GY +  D+T R+ Q++   A L  ++  G     P+   ++ K  +P P ++ +   V+ +IRQ G+T  MI  I  LI  IS  + L  GD+I
Sbjct:  121 KAASSLTGDNSTIPNHKDITDQLDYEGELGIVIGKSGEKIPKGLALDYVYGYTIINDITDRKAQNAQDQAFLSKSLTGG----CPVGPYIVTKDELPTPEDVNIVTKVNNDIRQDGNTGQMILKIDELIEEISKYVALHPGDII 260          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: Y1982_STAHJ (Uncharacterized protein SH1982 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH1982 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.045e-14
Identity = 49/144 (34.03%), Postives = 75/144 (52.08%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K  SS  G+  TI     + D L +E EL +VIG+    +P+  A+DY+ GY +  D+T R+ Q+    A L  ++  G     P+   ++ K  +P P N+ +   V+ +IRQ G+T  MI  I  LI  IS  + L  GD+I
Sbjct:  121 KAASSLTGDESTIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYIYGYTIINDITDRKAQNEQDQAFLSKSLTGG----CPMGPYIVTKDELPTPENVNIVTKVNNDIRQDGNTSQMINKIDDLIEEISKYVALHPGDII 260          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: Y665_STAES (Uncharacterized protein SE_0665 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_0665 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.671e-14
Identity = 51/143 (35.66%), Postives = 74/143 (51.75%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K  SS  G+  TI     + + L +E EL +VIG+    +P   A+DY+ GY +  D+T R  QSS   A L  ++  G     P   ++ K  +P P N+ +   V+ EIRQ G+T +MI  I  LI  IS  + L  GD+I
Sbjct:  121 KAASSLTGDEATIPNHKDITEQLDYEGELGIVIGKSGEKIPRGLALDYIYGYTIINDITDRTAQSSHDQAFLSKSLT-GACPMGPY--IVTKDELPAPENVNIVTKVNNEIRQDGNTGEMILKIDELIEKISKYVALHPGDII 260          
BLAST of CX289311 vs. ExPASy Swiss-Prot
Match: Y556_STAEQ (Uncharacterized protein SERP0556 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0556 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.671e-14
Identity = 51/143 (35.66%), Postives = 74/143 (51.75%), Query Frame = 1
Query:    1 KPTSSYLGNGGTIEVPHPL-DSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVLPKSAVPDPHNLELWLTVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVI 426
            K  SS  G+  TI     + + L +E EL +VIG+    +P   A+DY+ GY +  D+T R  QSS   A L  ++  G     P   ++ K  +P P N+ +   V+ EIRQ G+T +MI  I  LI  IS  + L  GD+I
Sbjct:  121 KAASSLTGDEATIPNHKDITEQLDYEGELGIVIGKSGEKIPRGLALDYIYGYTIINDITDRTAQSSHDQAFLSKSLT-GACPMGPY--IVTKDELPAPENVNIVTKVNNEIRQDGNTGEMILKIDELIEKISKYVALHPGDII 260          
The following BLAST results are available for this feature:
BLAST of CX289311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
Y837_STAAB1.416e-1536.11Uncharacterized protein SAB0837 OS=Staphylococcus ... [more]
Y829_STAAN1.416e-1536.11Uncharacterized protein SA0829 OS=Staphylococcus a... [more]
Y930_STAAR7.029e-1535.42Uncharacterized protein SAR0930 OS=Staphylococcus ... [more]
Y1806_STAS11.566e-1434.03Uncharacterized protein SSP1806 OS=Staphylococcus ... [more]
Y1982_STAHJ2.045e-1434.03Uncharacterized protein SH1982 OS=Staphylococcus h... [more]
Y665_STAES2.671e-1435.66Uncharacterized protein SE_0665 OS=Staphylococcus ... [more]
Y556_STAEQ2.671e-1435.66Uncharacterized protein SERP0556 OS=Staphylococcus... [more]

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Properties
Property NameValue
Genbank descriptionC02011E11SK IF1 Citrus clementina cDNA clone C02011E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289311 ID=CX289311; Name=CX289311; organism=Citrus clementina; type=EST; length=430bp
AAACCGACGTCGTCTTATTTAGGAAACGGAGGGACCATCGAGGTACCTCA
TCCCCTGGATTCGCTTCATCATGAAGTGGAGCTTGCAGTCGTGATCGGAC
AGAAAGCTCGAGATGTGCCTGAAACCACTGCCATGGACTATGTTGGAGGC
TATGCAGTGGCGCTTGATATGACTGCAAGGGAAATCCAATCTTCTGCCAA
GTCTGCAGGTCTTCCGTGGACAGTGGCTAAAGGGCAGGACACCTTCACAC
CAATTAGCTCTGTCCTACCAAAGTCAGCAGTGCCTGACCCTCACAACTTG
GAACTATGGTTAACGGTTGATGGAGAGATTCGACAGAAAGGCTCCACTAA
GGATATGATTTTTATGATACCATATCTAATTAGCCACATAAGTTCAATTA
TGACACTTTTTGAAGGAGATGTCATATTAA
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