CX289314

Overview
NameCX289314
Unique NameCX289314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length386
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10247 contig Ccv1_Contig10247:300..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDIA6_PONAB (Protein disulfide-isomerase A6 OS=Pongo abelii GN=PDIA6 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.564e-16
Identity = 46/125 (36.80%), Postives = 65/125 (52.00%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYV------------------NNEGGTNVKIAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAA 321
            VD D+H SL  +YGVQG+PTI+ F      P+ Y+G R+ EA+ +                     + G      ++   +V+ LT D+FD+ VLD     +VEFYAPW GHCKNL P +   A+
Sbjct:   81 VDADKHHSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRTGEAIVDAALSALRQLVKDRLGGQSGGYSSGKQGRSDSSSKKDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAAS 205          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDIA6_HUMAN (Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.564e-16
Identity = 46/125 (36.80%), Postives = 65/125 (52.00%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYV------------------NNEGGTNVKIAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAA 321
            VD D+H SL  +YGVQG+PTI+ F      P+ Y+G R+ EA+ +                     + G      ++   +V+ LT D+FD+ VLD     +VEFYAPW GHCKNL P +   A+
Sbjct:   81 VDADKHHSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRTGEAIVDAALSALRQLVKDRLGGRSGGYSSGKQGRSDSSSKKDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAAS 205          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDIA4_BOVIN (Protein disulfide-isomerase A4 OS=Bos taurus GN=PDIA4 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.564e-16
Identity = 52/129 (40.31%), Postives = 68/129 (52.71%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLED-DVVVANLDADKYKDL 384
            +D     +L S++ V GYPTI+   KG  +   YEG R+ E +   V      N      P   + LT DNFDE+V D +  +LVEFYAPW GHCK LAP YEK A   +     + +A +DA    DL
Sbjct:  119 IDATSESALASRFDVSGYPTIKILKKG--QEVDYEGSRTQEEIVAKVKEVSQPNW--TPPPEVTLVLTKDNFDEVVND-ADIILVEFYAPWCGHCKKLAPEYEKAAKELSKSSPPIPLAKVDAIAETDL 242          

HSP 2 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 36/110 (32.73%), Postives = 55/110 (50.00%), Query Frame = 1
Query:   82 SLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNVVG----LTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-------DKYK 378
            ++EP  ++     + +  +   +    +K   VP N  G    +    FD IV+D  KDVL+EFYAPW GHCK L P Y  +   +    ++V+A +DA       D+YK
Sbjct:  485 AMEPDDFDADALRDFVTAFKKGKLKPVIKSQPVPKNNKGPVKVVVGKTFDSIVMDPKKDVLIEFYAPWCGHCKQLEPVYTSLGKKYKGHKNLVIAKMDATANDVTSDRYK 594          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDIA6_MESAU (Protein disulfide-isomerase A6 OS=Mesocricetus auratus GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.667e-16
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYV------------------NNEGGTNVKIAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVA 318
            VD D+H+SL  +YGVQG+PTI+ F     +P+ Y+G R+ EA+ +                     + G      ++   +V+ LT D FD+ VLD     +VEFYAPW GHCKNL P +   A
Sbjct:   81 VDADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRQLVKDRLSGRSGGYSSGKQGRGDSSSKKDVIELTDDTFDKNVLDSDDVWMVEFYAPWCGHCKNLEPEWATAA 204          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDIA6_RAT (Protein disulfide-isomerase A6 OS=Rattus norvegicus GN=Pdia6 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.761e-16
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYV------------------NNEGGTNVKIAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVA 318
            V+ D+H+SL  +YGVQG+PTI+ F     +P+ Y+G R+ EA+ +                     + G      ++   +VV LT D FD+ VLD     +VEFYAPW GHCKNL P +   A
Sbjct:   81 VNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRQLVKDRLGGRSGGYSSGKQGRGDSSSKKDVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAA 204          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDIA6_MOUSE (Protein disulfide-isomerase A6 OS=Mus musculus GN=Pdia6 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 7.761e-16
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYV------------------NNEGGTNVKIAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVA 318
            V+ D+H+SL  +YGVQG+PTI+ F     +P+ Y+G R+ EA+ +                     + G      ++   +VV LT D FD+ VLD     +VEFYAPW GHCKNL P +   A
Sbjct:   81 VNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRQLVKDRLGGRSGGYSSGKQGRGDSSSKKDVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAA 204          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDIA4_MOUSE (Protein disulfide-isomerase A4 OS=Mus musculus GN=Pdia4 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.761e-16
Identity = 49/129 (37.98%), Postives = 68/129 (52.71%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLED-DVVVANLDADKYKDL 384
            +D      L SK+ V GYPTI+   KG  +   Y+G R+ E +   V      +      P   + LT DNFD++V + +  +LVEFYAPW GHCK LAP YEK A   +     + +A +DA +  DL
Sbjct:  113 IDATSASMLASKFDVSGYPTIKILKKG--QAVDYDGSRTQEEIVAKVREVSQPDW--TPPPEVTLSLTKDNFDDVV-NNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDL 236          

HSP 2 Score: 73.559 bits (179), Expect = 3.605e-13
Identity = 39/112 (34.82%), Postives = 59/112 (52.68%), Query Frame = 1
Query:   76 KGSLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNVVG----LTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-------DKYK 378
            K ++EP++++     E +  +   +    +K   VP N  G    +    FD IV+D  KDVL+EFYAPW GHCK L P Y  +   +  + D+V+A +DA       D+YK
Sbjct:  478 KFAMEPEEFDSDTLREFVTAFKKGKLKPVIKSQPVPKNNKGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYK 589          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDIA4_RAT (Protein disulfide-isomerase A4 OS=Rattus norvegicus GN=Pdia4 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.852e-15
Identity = 48/129 (37.21%), Postives = 68/129 (52.71%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLED-DVVVANLDADKYKDL 384
            +D      L SK+ V GYPTI+   KG  +   Y+G R+ E +   V      +      P   + LT +NFD++V + +  +LVEFYAPW GHCK LAP YEK A   +     + +A +DA +  DL
Sbjct:  118 IDATSASMLASKFDVSGYPTIKILKKG--QAVDYDGSRTQEEIVAKVREVSQPDW--TPPPEVTLTLTKENFDDVV-NNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDL 241          

HSP 2 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 39/112 (34.82%), Postives = 59/112 (52.68%), Query Frame = 1
Query:   76 KGSLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNVVG----LTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-------DKYK 378
            K ++EP++++     E +  +   +    +K   VP N  G    +    FD IV+D  KDVL+EFYAPW GHCK L P Y  +   +  + D+V+A +DA       D+YK
Sbjct:  483 KFAMEPEEFDSDALQEFVMAFKKGKLKPVIKSQPVPKNNKGPVRVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPVYTSLGKKYKGQKDLVIAKMDATANDITNDRYK 594          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDIA4_HUMAN (Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.852e-15
Identity = 50/129 (38.76%), Postives = 67/129 (51.94%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLED-DVVVANLDADKYKDL 384
            +D      L S++ V GYPTI+   KG  +   YEG R+ E +   V      +      P   + LT +NFDE+V D +  +LVEFYAPW GHCK LAP YEK A   +     + +A +DA    DL
Sbjct:  120 IDATSASVLASRFDVSGYPTIKILKKG--QAVDYEGSRTQEEIVAKVREVSQPDW--TPPPEVTLVLTKENFDEVVND-ADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDL 243          

HSP 2 Score: 73.9442 bits (180), Expect = 2.760e-13
Identity = 39/112 (34.82%), Postives = 59/112 (52.68%), Query Frame = 1
Query:   76 KGSLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNVVG----LTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-------DKYK 378
            K ++EP++++     E +  +   +    +K   VP N  G    +    FD IV+D  KDVL+EFYAPW GHCK L P Y  +A  +  +  +V+A +DA       D+YK
Sbjct:  485 KFAMEPEEFDSDTLREFVTAFKKGKLKPVIKSQPVPKNNKGPVKVVVGKTFDSIVMDPKKDVLIEFYAPWCGHCKQLEPVYNSLAKKYKGQKGLVIAKMDATANDVPSDRYK 596          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDIA6_CAEEL (Probable protein disulfide-isomerase A6 OS=Caenorhabditis elegans GN=tag-320 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 1
Query:    1 VDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNE---------GGTNVKIAAVPSN--------------VVGLTADNFDEIVLDKSKDV-LVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 366
            VD  +H+S+   Y VQG+PT++ F     +P  Y G R+A+A+A+ V  E         GG +   ++  S               VV LT  NF+++VL+ SKD+ LVEF+APW GHCK+L P ++  AAA  L+  V +  LDA
Sbjct:   80 VDMTQHQSVGGPYNVQGFPTLKIFGADKKKPTDYNGQRTAQAIADSVLAEAKKAVSARLGGKSSGSSSSGSGSGSGKRGGGGSGNEVVELTDANFEDLVLN-SKDIWLVEFFAPWCGHCKSLEPQWK--AAASELKGKVRLGALDA 222          
The following BLAST results are available for this feature:
BLAST of CX289314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
PDIA6_PONAB1.564e-1636.80Protein disulfide-isomerase A6 OS=Pongo abelii GN=... [more]
PDIA6_HUMAN1.564e-1636.80Protein disulfide-isomerase A6 OS=Homo sapiens GN=... [more]
PDIA4_BOVIN1.564e-1640.31Protein disulfide-isomerase A4 OS=Bos taurus GN=PD... [more]
PDIA6_MESAU2.667e-1637.10Protein disulfide-isomerase A6 OS=Mesocricetus aur... [more]
PDIA6_RAT7.761e-1637.10Protein disulfide-isomerase A6 OS=Rattus norvegicu... [more]
PDIA6_MOUSE7.761e-1637.10Protein disulfide-isomerase A6 OS=Mus musculus GN=... [more]
PDIA4_MOUSE7.761e-1637.98Protein disulfide-isomerase A4 OS=Mus musculus GN=... [more]
PDIA4_RAT3.852e-1537.21Protein disulfide-isomerase A4 OS=Rattus norvegicu... [more]
PDIA4_HUMAN3.852e-1538.76Protein disulfide-isomerase A4 OS=Homo sapiens GN=... [more]
PDIA6_CAEEL1.121e-1437.67Probable protein disulfide-isomerase A6 OS=Caenorh... [more]

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Properties
Property NameValue
Genbank descriptionC02011F02SK IF1 Citrus clementina cDNA clone C02011F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289314 ID=CX289314; Name=CX289314; organism=Citrus clementina; type=EST; length=386bp
GTGGACTGTGACGAGCATAAGAGCTTATGCAGCAAATATGGTGTTCAAGG
ATACCCAACAATTCAATGGTTTCCTAAAGGTTCTTTGGAACCCAAAAAGT
ATGAAGGGCCACGATCTGCTGAAGCCCTTGCTGAGTATGTGAATAATGAA
GGAGGAACCAATGTGAAGATAGCTGCAGTCCCATCCAATGTGGTGGGACT
AACAGCTGATAATTTTGATGAGATAGTTTTGGACAAAAGCAAAGATGTTT
TGGTTGAATTTTATGCACCATGGTGGGGCCATTGCAAAAACCTTGCGCCT
ACATATGAAAAGGTGGCAGCCGCATTTACATTGGAAGATGATGTAGTTGT
TGCTAATTTGGATGCTGACAAATACAAGGATCTGGC
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