CX289314

Overview
NameCX289314
Unique NameCX289314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length386
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10247 contig Ccv1_Contig10247:300..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDI2_DICDI (Protein disulfide-isomerase 2 OS=Dictyostelium discoideum GN=pdi2 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1
Query:  214 FDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 369
            F ++VLD  KDVLVEFYAPW GHCKNLAP Y+K+       + V +  +DAD
Sbjct:  386 FKKLVLDSPKDVLVEFYAPWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDAD 437          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDI_MEDSA (Protein disulfide-isomerase OS=Medicago sativa GN=PDI PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  190 VVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 366
            VVG T    +++V    K+VL+EFYAPW GHCK LAP  ++VA +F  + DVV+A LDA
Sbjct:  382 VVGQT---LEDVVFKSGKNVLIEFYAPWCGHCKQLAPILDEVAVSFQSDADVVIAKLDA 437          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDIA1_RAT (Protein disulfide-isomerase OS=Rattus norvegicus GN=P4hb PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 1
Query:  199 LTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 366
            L   NF+E+  D+ K+V VEFYAPW GHCK LAP ++K+   +   +++V+A +D+
Sbjct:  374 LVGKNFEEVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDS 429          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDIA1_BOVIN (Protein disulfide-isomerase OS=Bos taurus GN=P4HB PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.517e-11
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 1
Query:  199 LTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 366
            L   NF+E+  D+ K+V VEFYAPW GHCK LAP ++K+   +   +++V+A +D+
Sbjct:  374 LVGKNFEEVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDS 429          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDI_MAIZE (Protein disulfide-isomerase OS=Zea mays GN=PDI PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 46/124 (37.10%), Postives = 62/124 (50.00%), Query Frame = 1
Query:    4 DCDEHKSLCSKYGVQGYPTIQWFPK---GSLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNVVGLTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 366
            D D  K L  K  V+    + W  +   G L P      R++E + E VNNE          P  VV   ADN  + V    K+VL+EFYAPW GHCK LAP  ++ A     +++VV+A +DA
Sbjct:  335 DGDSKKFL--KVHVEADQIVAWLKEYFDGKLTPF-----RNSEPIPE-VNNE----------PVKVV--VADNVHDFVFKSGKNVLIEFYAPWCGHCKKLAPILDEAATTLQSDEEVVIAKMDA 438          
BLAST of CX289314 vs. ExPASy Swiss-Prot
Match: PDIA1_CRIGR (Protein disulfide-isomerase OS=Cricetulus griseus GN=P4HB PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.817e-11
Identity = 24/56 (42.86%), Postives = 39/56 (69.64%), Query Frame = 1
Query:  199 LTADNFDEIVLDKSKDVLVEFYAPWWGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 366
            L   NF+E+  D+ K+V VEFYAPW GHCK LAP ++K+   +   +++++A +D+
Sbjct:  374 LVGKNFEEVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIIIAKMDS 429          
The following BLAST results are available for this feature:
BLAST of CX289314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
PDI2_DICDI5.755e-1155.77Protein disulfide-isomerase 2 OS=Dictyostelium dis... [more]
PDI_MEDSA7.517e-1152.54Protein disulfide-isomerase OS=Medicago sativa GN=... [more]
PDIA1_RAT7.517e-1144.64Protein disulfide-isomerase OS=Rattus norvegicus G... [more]
PDIA1_BOVIN7.517e-1144.64Protein disulfide-isomerase OS=Bos taurus GN=P4HB ... [more]
PDI_MAIZE9.817e-1137.10Protein disulfide-isomerase OS=Zea mays GN=PDI PE=... [more]
PDIA1_CRIGR9.817e-1142.86Protein disulfide-isomerase OS=Cricetulus griseus ... [more]

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Properties
Property NameValue
Genbank descriptionC02011F02SK IF1 Citrus clementina cDNA clone C02011F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289314 ID=CX289314; Name=CX289314; organism=Citrus clementina; type=EST; length=386bp
GTGGACTGTGACGAGCATAAGAGCTTATGCAGCAAATATGGTGTTCAAGG
ATACCCAACAATTCAATGGTTTCCTAAAGGTTCTTTGGAACCCAAAAAGT
ATGAAGGGCCACGATCTGCTGAAGCCCTTGCTGAGTATGTGAATAATGAA
GGAGGAACCAATGTGAAGATAGCTGCAGTCCCATCCAATGTGGTGGGACT
AACAGCTGATAATTTTGATGAGATAGTTTTGGACAAAAGCAAAGATGTTT
TGGTTGAATTTTATGCACCATGGTGGGGCCATTGCAAAAACCTTGCGCCT
ACATATGAAAAGGTGGCAGCCGCATTTACATTGGAAGATGATGTAGTTGT
TGCTAATTTGGATGCTGACAAATACAAGGATCTGGC
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