CX289347

Overview
NameCX289347
Unique NameCX289347
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length395
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUS1_MAIZE (Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 8.655e-60
Identity = 109/131 (83.21%), Postives = 118/131 (90.08%), Query Frame = 2
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            F+MARLDRVKN+TGLVE YGKNA+LREL NLV+V GD  KESKD EEQAE KKMYSLID+YKL G  RWIS+QMNRVRNGELYRYICDTKGAFVQPA YEAFGLTV+E+MTCGLPT ATC GGPAEIIV+G
Sbjct:  571 FSMARLDRVKNMTGLVEMYGKNARLRELANLVIVAGDHGKESKDREEQAEFKKMYSLIDEYKLKGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVIESMTCGLPTIATCHGGPAEIIVDG 701          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUS1_TULGE (Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 5.610e-59
Identity = 109/131 (83.21%), Postives = 119/131 (90.84%), Query Frame = 2
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            F+MARLDRVKN+TGLVE YGKN +L+ELVNLVVV GD  KESKDLEEQAE+KKMY LI++YKL G  RWIS+QMNRVRNGELYRYI DTKGAFVQPA YEAFGLTVVE+MTCGLPTFATC GGPAEIIV+G
Sbjct:  573 FSMARLDRVKNMTGLVELYGKNDRLKELVNLVVVAGDHGKESKDLEEQAELKKMYKLIEEYKLQGHIRWISAQMNRVRNGELYRYIADTKGAFVQPAFYEAFGLTVVESMTCGLPTFATCHGGPAEIIVHG 703          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUS1_HORVU (Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 2.784e-58
Identity = 106/131 (80.92%), Postives = 117/131 (89.31%), Query Frame = 2
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            F+MARLDRVKN+TGLVE YGKNA L++L NLV+V GD  KESKD EEQAE K+MYSLI++YKL G  RWIS+QMNRVRNGELYRYICDTKGAFVQPA YEAFGLTV+EAMTCGLPT ATC GGPAEIIV+G
Sbjct:  570 FSMARLDRVKNMTGLVEMYGKNAHLKDLANLVIVAGDHGKESKDREEQAEFKRMYSLIEEYKLKGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVIEAMTCGLPTIATCHGGPAEIIVDG 700          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUSY_ALNGL (Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 8.101e-58
Identity = 109/132 (82.58%), Postives = 118/132 (89.39%), Query Frame = 2
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAF-VQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            FTMARLDRVKN+TGLVEWYGKN +LRELVNLVVV G+  KESKD EE+AEM KM+ LI+ YKLNGQFRWISSQMNRVRNGELYRYI DTKG     PA+YEAFGLTVVE+MTCGLPTFATCKGGPAEIIV+G
Sbjct:  571 FTMARLDRVKNITGLVEWYGKNTRLRELVNLVVVAGNLEKESKDNEEKAEMTKMHGLIETYKLNGQFRWISSQMNRVRNGELYRYIADTKGGLCAGPAIYEAFGLTVVESMTCGLPTFATCKGGPAEIIVHG 702          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUS2_ORYSJ (Sucrose synthase 2 OS=Oryza sativa subsp. japonica GN=SUS2 PE=1 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 1.382e-57
Identity = 106/131 (80.92%), Postives = 114/131 (87.02%), Query Frame = 2
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            F+MARLDRVKN+TGLVE YGKNA LR+L NLV+V GD   +SKD EEQAE KKMY LIDQYKL G  RWIS+QMNRVRNGELYRYICDTKG FVQPA YEAFGLTV+EAMTCGLPT ATC GGPAEIIV+G
Sbjct:  571 FSMARLDRVKNMTGLVEMYGKNAHLRDLANLVIVCGDHGNQSKDREEQAEFKKMYGLIDQYKLKGHIRWISAQMNRVRNGELYRYICDTKGVFVQPAFYEAFGLTVIEAMTCGLPTIATCHGGPAEIIVDG 701          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUS2_TULGE (Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 5.251e-57
Identity = 106/131 (80.92%), Postives = 118/131 (90.08%), Query Frame = 2
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            F+MARLDRVKN+TGLVE Y KN +L+ELVNLVVV GD  K SKDLEEQAE+KKMYSLI++YKL+G  RWIS+QMNRVRNGELYRYI D+KG FVQPA YEAFGLTVVE+MTCGLPTFATC GGPAEIIV+G
Sbjct:  575 FSMARLDRVKNMTGLVELYAKNDRLKELVNLVVVCGDHAKASKDLEEQAELKKMYSLIEEYKLDGHIRWISAQMNRVRNGELYRYIADSKGVFVQPAFYEAFGLTVVESMTCGLPTFATCHGGPAEIIVHG 705          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUS1_ORYSJ (Sucrose synthase 1 OS=Oryza sativa subsp. japonica GN=SUS1 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 8.956e-57
Identity = 107/131 (81.68%), Postives = 115/131 (87.79%), Query Frame = 2
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            F+MARLDRVKNLTGLVE YG+N +L+ELVNLVVV GD    SKD EEQAE KKM+ LI+QY LNG  RWIS+QMNRVRNGELYRYICDTKGAFVQPA YEAFGLTVVE+MTCGLPTFAT  GGPAEIIVNG
Sbjct:  579 FSMARLDRVKNLTGLVELYGRNPRLQELVNLVVVCGDHGNPSKDKEEQAEFKKMFDLIEQYNLNGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVVESMTCGLPTFATAYGGPAEIIVNG 709          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUS3_ORYSJ (Sucrose synthase 3 OS=Oryza sativa subsp. japonica GN=SUS3 PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 1.170e-56
Identity = 106/131 (80.92%), Postives = 117/131 (89.31%), Query Frame = 2
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            F+MARLD VKNLTGLVE YG+N +L+ELVNLVVV GD  KESKD EEQAE KKM++LI+QY LNG  RWIS+QMNRVRNGELYRYICD +GAFVQPALYEAFGLTV+EAMTCGLPTFAT  GGPAEIIV+G
Sbjct:  579 FSMARLDHVKNLTGLVELYGRNPRLQELVNLVVVCGDHGKESKDKEEQAEFKKMFNLIEQYNLNGHIRWISAQMNRVRNGELYRYICDMRGAFVQPALYEAFGLTVIEAMTCGLPTFATAYGGPAEIIVHG 709          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUS2_MAIZE (Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.528e-56
Identity = 107/131 (81.68%), Postives = 115/131 (87.79%), Query Frame = 2
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            F+MARLDRVKNLTGLVE YG+N +L+ELVNLVVV GD    SKD EEQAE KKM+ LI+QY LNG  RWIS+QMNRVRNGELYRYICDTKGAFVQPA YEAFGLTVVEAMTCGLPTFAT  GGPAEIIV+G
Sbjct:  579 FSMARLDRVKNLTGLVELYGRNKRLQELVNLVVVCGDHGNPSKDKEEQAEFKKMFDLIEQYNLNGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATAYGGPAEIIVHG 709          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUS2_HORVU (Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.763e-55
Identity = 103/131 (78.63%), Postives = 114/131 (87.02%), Query Frame = 2
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            F+MARLDRVKN+TGLVE YG+N +L+ELVNLVVV GD  K SKD EEQ E KKM+ LI++Y L+G  RWIS+QMNRVRNGELYRYICD KGAFVQPA YEAFGLTV+EAMTCGLPTFAT  GGPAEIIVNG
Sbjct:  579 FSMARLDRVKNMTGLVEMYGRNPRLQELVNLVVVCGDHGKVSKDKEEQVEFKKMFDLIEKYNLSGHIRWISAQMNRVRNGELYRYICDMKGAFVQPAFYEAFGLTVIEAMTCGLPTFATAYGGPAEIIVNG 709          
The following BLAST results are available for this feature:
BLAST of CX289347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SUS1_MAIZE8.655e-6083.21Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1[more]
SUS1_TULGE5.610e-5983.21Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1[more]
SUS1_HORVU2.784e-5880.92Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 ... [more]
SUSY_ALNGL8.101e-5882.58Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 S... [more]
SUS2_ORYSJ1.382e-5780.92Sucrose synthase 2 OS=Oryza sativa subsp. japonica... [more]
SUS2_TULGE5.251e-5780.92Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1[more]
SUS1_ORYSJ8.956e-5781.68Sucrose synthase 1 OS=Oryza sativa subsp. japonica... [more]
SUS3_ORYSJ1.170e-5680.92Sucrose synthase 3 OS=Oryza sativa subsp. japonica... [more]
SUS2_MAIZE1.528e-5681.68Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1[more]
SUS2_HORVU3.763e-5578.63Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC02012A02SK IF1 Citrus clementina cDNA clone C02012A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289347 ID=CX289347; Name=CX289347; organism=Citrus clementina; type=EST; length=395bp
GTTTACAATGGCAAGATTGGACCGTGTAAAGAATTTGACTGGGCTTGTGG
AGTGGTATGGAAAGAATGCTAAGCTACGTGAGTTGGTGAACTTAGTCGTA
GTGGGTGGTGATAGGAGAAAGGAGTCCAAGGACTTGGAAGAACAGGCTGA
AATGAAGAAGATGTATTCCCTCATTGATCAATACAAATTGAATGGCCAGT
TCCGATGGATCTCTTCTCAGATGAATCGGGTCAGGAACGGTGAATTGTAC
CGGTACATTTGTGATACAAAGGGAGCTTTTGTGCAACCTGCACTGTATGA
GGCCTTTGGCTTGACTGTTGTTGAGGCCATGACCTGTGGATTGCCAACAT
TTGCAACTTGCAAGGGTGGCCCCGCTGAGATTATCGTTAACGGGA
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