CX289347

Overview
NameCX289347
Unique NameCX289347
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length395
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUS2_ARATH (Sucrose synthase 2 OS=Arabidopsis thaliana GN=At5g49190 PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 1.338e-52
Identity = 100/132 (75.76%), Postives = 114/132 (86.36%), Query Frame = 2
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGD-RRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            F+MARLDRVKNLTGLVE Y KN+KLREL NLV+VGG     +S+D EE AE++KM+SLI+QY L+G+FRWI++QMNR RNGELYRYI DTKG FVQPA YEAFGLTVVE+MTC LPTFATC GGPAEII NG
Sbjct:  571 FSMARLDRVKNLTGLVECYAKNSKLRELANLVIVGGYIDENQSRDREEMAEIQKMHSLIEQYDLHGEFRWIAAQMNRARNGELYRYIADTKGVFVQPAFYEAFGLTVVESMTCALPTFATCHGGPAEIIENG 702          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUSY_BETVU (Sucrose synthase (Fragment) OS=Beta vulgaris GN=SS1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.480e-51
Identity = 101/132 (76.52%), Postives = 111/132 (84.09%), Query Frame = 2
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGG-DRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            F+MARLDRVKN+TGLVE YGKNAKLREL NLVVV G +  K+S D EE AE++KM+ LI +Y L GQFRWI+SQ NRVRNGELYRYICD  G F QPA YEAFGLTVVEAMTCGLPTFATC GGPAEII +G
Sbjct:  520 FSMARLDRVKNITGLVECYGKNAKLRELANLVVVAGYNDVKKSNDREEIAEIEKMHRLIQEYNLRGQFRWIASQTNRVRNGELYRYICDKGGIFAQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEDG 651          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUS2_PEA (Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.809e-49
Identity = 99/132 (75.00%), Postives = 111/132 (84.09%), Query Frame = 2
Query:    2 FTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRR-KESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            F+MARLDRVKN+TGLVE Y KN+KLRELVNLVVV G    K+S D EE  E++KM+ L+ QY LNG+FRWI++Q NR RNGELYRYI DTKGAFVQPA YEAFGLTVVEAMTCGLPTFAT  GGPAEII +G
Sbjct:  577 FSMARLDRVKNITGLVESYAKNSKLRELVNLVVVAGYIDVKKSSDREEIEEIEKMHDLMKQYNLNGEFRWITAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATNHGGPAEIIEHG 708          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SUSY_SACOF (Sucrose synthase (Fragment) OS=Saccharum officinarum GN=SUS1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.905e-33
Identity = 80/131 (61.07%), Postives = 86/131 (65.65%), Query Frame = 2
Query:   11 ARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKD---LEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG 394
            ARLDRVKN+TG VE  GK A+LREL N V+V GD  KESKD    EEQ   KKMYSLID YK  G  R IS+QMNRVRNGELY+YICDTKGAFVQPA YEAF L                   P EII +G
Sbjct:    1 ARLDRVKNMTGPVEISGKKARLRELANPVIVAGDHGKESKDRDEAEEQGGFKKMYSLIDDYKFKGHIRLISAQMNRVRNGELYQYICDTKGAFVQPA-YEAFRLDCDRVHEVRSAKDRDLPWRPCEIIADG 130          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SPS_BETVU (Sucrose-phosphate synthase OS=Beta vulgaris GN=SPS PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.018e-16
Identity = 50/126 (39.68%), Postives = 69/126 (54.76%), Query Frame = 2
Query:    8 MARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRK-ESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEI 382
            +AR D  KN+T LV+ +G+   LREL NL ++ G+R   +       + +  +  LIDQY L GQ  +      +    E+YR    TKG F+ PA  E FGLT++EA   GLP  AT  GGP +I
Sbjct:  479 LARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDGIDEMSSTSSSVLLSVLKLIDQYDLYGQVAY-PKHHKQADVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDI 603          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SPS_SPIOL (Sucrose-phosphate synthase OS=Spinacia oleracea GN=SPS1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.443e-16
Identity = 50/127 (39.37%), Postives = 70/127 (55.12%), Query Frame = 2
Query:    8 MARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRK-ESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEII 385
            +AR D  KNLT LV+ +G+   LREL NL ++ G+R   +       + +  +  LID+Y L GQ  +      +    ++YR    TKG F+ PA  E FGLT++EA   GLP  AT  GGP +II
Sbjct:  489 LARPDPKKNLTTLVKAFGECRPLRELANLTLIIGNRDDIDEMSTTSSSVLISILKLIDKYDLYGQVAY-PKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNGGPVDII 614          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SPS_SOLTU (Sucrose-phosphate synthase OS=Solanum tuberosum GN=SPS PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.308e-15
Identity = 48/126 (38.10%), Postives = 69/126 (54.76%), Query Frame = 2
Query:    8 MARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRK-ESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEI 382
            +AR D  KNLT LV+ +G+   LR+L NL ++ G+R   +       A +  +  +ID+Y L GQ  +      +    ++YR    TKG F+ PA  E FGLT++EA   GLP  AT  GGP +I
Sbjct:  479 LARPDPKKNLTTLVKAFGECRPLRDLANLTLIMGNRDNIDEMSSTNSALLLSILKMIDKYDLYGQVAY-PKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPMVATKNGGPVDI 603          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SPS1_CITUN (Sucrose-phosphate synthase 1 OS=Citrus unshiu GN=SPS1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.308e-15
Identity = 50/126 (39.68%), Postives = 69/126 (54.76%), Query Frame = 2
Query:    8 MARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAE-MKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEI 382
            +AR D  KN+T LV+ +G+   LREL NL ++ G+R    +     A  +  +  LID+Y L GQ  +      +    E+YR    TKG F+ PA  E FGLT++EA   GLP  AT  GGP +I
Sbjct:  481 LARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDGIDEMSSTSASVLLSVLKLIDKYDLYGQVAY-PKHHKQSDVPEIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDI 605          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SPS_VICFA (Sucrose-phosphate synthase OS=Vicia faba GN=SPS PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.709e-15
Identity = 48/126 (38.10%), Postives = 69/126 (54.76%), Query Frame = 2
Query:    8 MARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRK-ESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEI 382
            +AR D  KN+T LV+ +G+   LREL NL ++ G+R   +       + +  +  LID+Y L GQ  +      +    ++YR    TKG F+ PA  E FGLT++EA   GLP  AT  GGP +I
Sbjct:  482 LARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDGIDEMSSTSSSVLLSVLKLIDKYDLYGQVAY-PKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPMVATKNGGPVDI 606          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SPS_MAIZE (Sucrose-phosphate synthase OS=Zea mays GN=SPS PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.232e-15
Identity = 48/126 (38.10%), Postives = 69/126 (54.76%), Query Frame = 2
Query:    8 MARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRK-ESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEI 382
            ++R D  KN+T LV+ +G+   LREL NL ++ G+R   +       + +  +  LID+Y L G   +     N+    E+YR     KG F+ PAL E FGLT++EA   GLP  AT  GGP +I
Sbjct:  494 LSRPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDDMSAGNASVLTTVLKLIDKYDLYGSVAF-PKHHNQADVPEIYRLAAKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDI 618          
The following BLAST results are available for this feature:
BLAST of CX289347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SUS2_ARATH1.338e-5275.76Sucrose synthase 2 OS=Arabidopsis thaliana GN=At5g... [more]
SUSY_BETVU1.480e-5176.52Sucrose synthase (Fragment) OS=Beta vulgaris GN=SS... [more]
SUS2_PEA1.809e-4975.00Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 S... [more]
SUSY_SACOF6.905e-3361.07Sucrose synthase (Fragment) OS=Saccharum officinar... [more]
SPS_BETVU2.018e-1639.68Sucrose-phosphate synthase OS=Beta vulgaris GN=SPS... [more]
SPS_SPIOL3.443e-1639.37Sucrose-phosphate synthase OS=Spinacia oleracea GN... [more]
SPS_SOLTU1.308e-1538.10Sucrose-phosphate synthase OS=Solanum tuberosum GN... [more]
SPS1_CITUN1.308e-1539.68Sucrose-phosphate synthase 1 OS=Citrus unshiu GN=S... [more]
SPS_VICFA1.709e-1538.10Sucrose-phosphate synthase OS=Vicia faba GN=SPS PE... [more]
SPS_MAIZE2.232e-1538.10Sucrose-phosphate synthase OS=Zea mays GN=SPS PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC02012A02SK IF1 Citrus clementina cDNA clone C02012A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289347 ID=CX289347; Name=CX289347; organism=Citrus clementina; type=EST; length=395bp
GTTTACAATGGCAAGATTGGACCGTGTAAAGAATTTGACTGGGCTTGTGG
AGTGGTATGGAAAGAATGCTAAGCTACGTGAGTTGGTGAACTTAGTCGTA
GTGGGTGGTGATAGGAGAAAGGAGTCCAAGGACTTGGAAGAACAGGCTGA
AATGAAGAAGATGTATTCCCTCATTGATCAATACAAATTGAATGGCCAGT
TCCGATGGATCTCTTCTCAGATGAATCGGGTCAGGAACGGTGAATTGTAC
CGGTACATTTGTGATACAAAGGGAGCTTTTGTGCAACCTGCACTGTATGA
GGCCTTTGGCTTGACTGTTGTTGAGGCCATGACCTGTGGATTGCCAACAT
TTGCAACTTGCAAGGGTGGCCCCGCTGAGATTATCGTTAACGGGA
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