CX289347

Overview
NameCX289347
Unique NameCX289347
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length395
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SPS2_CRAPL (Sucrose-phosphate synthase 2 OS=Craterostigma plantagineum GN=SPS2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.915e-15
Identity = 50/130 (38.46%), Postives = 72/130 (55.38%), Query Frame = 2
Query:    8 MARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAE-----MKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEI 382
            ++R D  KN+T LV+ +G+   LREL NL ++ G+R     D++E +      +  +  LID+Y L GQ  +      +    E+YR    TKG F+ PA  E FGLT++EA   GLP  AT  GGP +I
Sbjct:  502 LSRPDPKKNITTLVKAFGECRPLRELANLTLIMGNR----DDIDEMSGGNASVLTTVLKLIDRYDLYGQVAF-PKHHKQSDVPEIYRLASKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDI 626          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SPS_ORYSJ (Probable sucrose-phosphate synthase OS=Oryza sativa subsp. japonica GN=SPS1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 49/130 (37.69%), Postives = 72/130 (55.38%), Query Frame = 2
Query:    8 MARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAE-----MKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEI 382
            ++R D  KN+T LV+ +G+   LREL NL+++ G+R     D++E +      +  +  LID+Y L G   +      +    E+YR     KG F+ PAL E FGLT++EA   GLP  AT  GGP +I
Sbjct:  508 LSRPDPKKNITTLVKAFGECRPLRELANLILIMGNR----DDIDEMSAGNASVLTTVLKLIDKYDLYGSVAF-PKHHKQSDVPEIYRLTGKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDI 632          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SPS_ORYSI (Probable sucrose-phosphate synthase OS=Oryza sativa subsp. indica GN=SPS1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 49/130 (37.69%), Postives = 72/130 (55.38%), Query Frame = 2
Query:    8 MARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAE-----MKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEI 382
            ++R D  KN+T LV+ +G+   LREL NL+++ G+R     D++E +      +  +  LID+Y L G   +      +    E+YR     KG F+ PAL E FGLT++EA   GLP  AT  GGP +I
Sbjct:  508 LSRPDPKKNITTLVKAFGECRPLRELANLILIMGNR----DDIDEMSAGNASVLTTVLKLIDKYDLYGSVAF-PKHHKQSDVPEIYRLTGKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDI 632          
BLAST of CX289347 vs. ExPASy Swiss-Prot
Match: SPS1_CRAPL (Sucrose-phosphate synthase 1 OS=Craterostigma plantagineum GN=SPS1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.889e-14
Identity = 48/126 (38.10%), Postives = 68/126 (53.97%), Query Frame = 2
Query:    8 MARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAE-MKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEI 382
            +AR D  KNLT LV+ +G+   LREL NL ++ G+R    +     A  +  +  +ID+Y L G   +      +    ++YR    TKG F+ PA  E FGLT++EA   GLP  AT  GGP +I
Sbjct:  480 LARPDPKKNLTTLVKAFGECKPLRELANLTLIMGNRDNIDEMSGTNASVLLSILKMIDKYDLYGLVAY-PKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDI 604          
The following BLAST results are available for this feature:
BLAST of CX289347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SPS2_CRAPL2.915e-1538.46Sucrose-phosphate synthase 2 OS=Craterostigma plan... [more]
SPS_ORYSJ1.108e-1437.69Probable sucrose-phosphate synthase OS=Oryza sativ... [more]
SPS_ORYSI1.108e-1437.69Probable sucrose-phosphate synthase OS=Oryza sativ... [more]
SPS1_CRAPL1.889e-1438.10Sucrose-phosphate synthase 1 OS=Craterostigma plan... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02012A02SK IF1 Citrus clementina cDNA clone C02012A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289347 ID=CX289347; Name=CX289347; organism=Citrus clementina; type=EST; length=395bp
GTTTACAATGGCAAGATTGGACCGTGTAAAGAATTTGACTGGGCTTGTGG
AGTGGTATGGAAAGAATGCTAAGCTACGTGAGTTGGTGAACTTAGTCGTA
GTGGGTGGTGATAGGAGAAAGGAGTCCAAGGACTTGGAAGAACAGGCTGA
AATGAAGAAGATGTATTCCCTCATTGATCAATACAAATTGAATGGCCAGT
TCCGATGGATCTCTTCTCAGATGAATCGGGTCAGGAACGGTGAATTGTAC
CGGTACATTTGTGATACAAAGGGAGCTTTTGTGCAACCTGCACTGTATGA
GGCCTTTGGCTTGACTGTTGTTGAGGCCATGACCTGTGGATTGCCAACAT
TTGCAACTTGCAAGGGTGGCCCCGCTGAGATTATCGTTAACGGGA
back to top