CX289349

Overview
NameCX289349
Unique NameCX289349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA2_DROME (Tubulin alpha-2 chain OS=Drosophila melanogaster GN=alphaTub85E PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.254e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEF+EAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFAEAREDLAALEKDY 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1_YEAST (Tubulin alpha-1 chain OS=Saccharomyces cerevisiae GN=TUB1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.254e-17
Identity = 38/42 (90.48%), Postives = 42/42 (100.00%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID+KFDLMY+KRAFVHWYVGEGMEEGEF+EAREDLAALE+DY
Sbjct:  392 IDRKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALERDY 433          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1_HOMAM (Tubulin alpha-1 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.254e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEF+EAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDY 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBAN_GUITH (Tubulin alpha chain, nucleomorph OS=Guillardia theta GN=tubA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 38/42 (90.48%), Postives = 42/42 (100.00%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            I++KFDLMYSKRAFVHWYVGEGMEEGEF+EARED+AALEKDY
Sbjct:  391 INKKFDLMYSKRAFVHWYVGEGMEEGEFNEAREDMAALEKDY 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA2_CHLRE (Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii GN=TUBA2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKD+
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDF 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA2_CAEEL (Tubulin alpha-2 chain OS=Caenorhabditis elegans GN=tba-2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEF+EAREDLAALEKDY
Sbjct:  389 LDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDY 430          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1_VOLCA (Tubulin alpha-1/alpha-2 chain OS=Volvox carteri GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKD+
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDF 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1_CHLRE (Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.209e-16
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKD+
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDF 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA2_ANEPH (Tubulin alpha-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID KFDLMY+K AFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  307 IDHKFDLMYAKLAFVHWYVGEGMEEGEFSEAREDLAALEKDY 348          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.062e-16
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +  KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE+DY
Sbjct:  391 LSHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 432          
The following BLAST results are available for this feature:
BLAST of CX289349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TBA2_DROME9.254e-1790.48Tubulin alpha-2 chain OS=Drosophila melanogaster G... [more]
TBA1_YEAST9.254e-1790.48Tubulin alpha-1 chain OS=Saccharomyces cerevisiae ... [more]
TBA1_HOMAM9.254e-1790.48Tubulin alpha-1 chain OS=Homarus americanus PE=2 S... [more]
TBAN_GUITH1.209e-1690.48Tubulin alpha chain, nucleomorph OS=Guillardia the... [more]
TBA2_CHLRE1.209e-1690.48Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii... [more]
TBA2_CAEEL1.209e-1690.48Tubulin alpha-2 chain OS=Caenorhabditis elegans GN... [more]
TBA1_VOLCA1.209e-1690.48Tubulin alpha-1/alpha-2 chain OS=Volvox carteri GN... [more]
TBA1_CHLRE1.209e-1690.48Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii... [more]
TBA2_ANEPH1.578e-1692.86Tubulin alpha-2 chain (Fragment) OS=Anemia phyllit... [more]
TBA_MYCGR2.062e-1690.48Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]

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Properties
Property NameValue
Genbank descriptionC02012A04SK IF1 Citrus clementina cDNA clone C02012A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289349 ID=CX289349; Name=CX289349; organism=Citrus clementina; type=EST; length=404bp
AATTGATCAAAAGTTTGATTTGATGTACTCGAAGAGGGCGTTTGTGCATT
GGTATGTGGGTGAAGGCATGGAGGAAGGAGAGTTTTCGGAGGCTAGAGAG
GATTTGGCTGCACTTGAGAAGGATTACGAGGAAGTTGGTGCTGAGTCTGC
TGACGGAGAAGAAGAAGAAGGAGACGAGTACTAGGCAGTGATATTGGATT
TGTTCTTCTGCCAATGGACTCATTGGTCTGCCCTCGCTATAATGGATGAT
ACCAGACTCATATGTAGCCGAACCTATGCTCTTTTTGCCTCTTTTTCGTG
TTATATATTAGGCCCAAATGAGTTAACAAAATTTGCACTGTTTTCAACCT
TTATTTATTATATATTTGAGGCACAAAAAGCTTTTATAGTAAAAAAAAAA
AAAA
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