CX289349

Overview
NameCX289349
Unique NameCX289349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA4_GOSHI (Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.435e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 IDHKFDLMYTKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA3_HORVU (Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.435e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 IDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.435e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 IDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.435e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 IDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA2_STYLE (Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.435e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  390 IDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 431
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA2_PELFA (Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.435e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 IDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA2_ORYSJ (Tubulin alpha-2 chain OS=Oryza sativa subsp. japonica GN=TUBA PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.435e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 IDIKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA2_MAIZE (Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.435e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 IDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA2_HORVU (Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.435e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 IDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA2_ARATH (Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.435e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 IDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
The following BLAST results are available for this feature:
BLAST of CX289349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TBA4_GOSHI2.435e-1795.24Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA3_HORVU2.435e-1795.24Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 ... [more]
TBA3_ELEIN2.435e-1795.24Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ... [more]
TBA3_ARATH2.435e-1795.24Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thali... [more]
TBA2_STYLE2.435e-1795.24Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA2_PELFA2.435e-1795.24Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TU... [more]
TBA2_ORYSJ2.435e-1797.62Tubulin alpha-2 chain OS=Oryza sativa subsp. japon... [more]
TBA2_MAIZE2.435e-1795.24Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV... [more]
TBA2_HORVU2.435e-1795.24Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 ... [more]
TBA2_ARATH2.435e-1795.24Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionC02012A04SK IF1 Citrus clementina cDNA clone C02012A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289349 ID=CX289349; Name=CX289349; organism=Citrus clementina; type=EST; length=404bp
AATTGATCAAAAGTTTGATTTGATGTACTCGAAGAGGGCGTTTGTGCATT
GGTATGTGGGTGAAGGCATGGAGGAAGGAGAGTTTTCGGAGGCTAGAGAG
GATTTGGCTGCACTTGAGAAGGATTACGAGGAAGTTGGTGCTGAGTCTGC
TGACGGAGAAGAAGAAGAAGGAGACGAGTACTAGGCAGTGATATTGGATT
TGTTCTTCTGCCAATGGACTCATTGGTCTGCCCTCGCTATAATGGATGAT
ACCAGACTCATATGTAGCCGAACCTATGCTCTTTTTGCCTCTTTTTCGTG
TTATATATTAGGCCCAAATGAGTTAACAAAATTTGCACTGTTTTCAACCT
TTATTTATTATATATTTGAGGCACAAAAAGCTTTTATAGTAAAAAAAAAA
AAAA
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