CX289349

Overview
NameCX289349
Unique NameCX289349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289349_ssr157 microsatellite CX289349_ssr157:157..168. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA2_GOSHI (Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.181e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID KFDLMY+KRAF+HWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 IDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA_TETTH (Tubulin alpha chain OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA_TETPY (Tubulin alpha chain OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  180 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 221
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA_LYTPI (Tubulin alpha chain (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  101 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 142
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA_LEPDS (Tubulin alpha chain OS=Lepidoglyphus destructor PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA_HAECO (Tubulin alpha chain OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA_ENTDO (Tubulin alpha chain OS=Enteroctopus dofleini PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA_CHLVU (Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA_CANAL (Tubulin alpha chain OS=Candida albicans GN=TUB1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 42/42 (100.00%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID+KFDLMYSKRAFVHWYVGEGMEEGEF+EAREDLAALE+DY
Sbjct:  392 IDRKFDLMYSKRAFVHWYVGEGMEEGEFTEAREDLAALERDY 433
The following BLAST results are available for this feature:
BLAST of CX289349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TBA2_GOSHI3.181e-1792.86Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA_TETTH4.154e-1792.86Tubulin alpha chain OS=Tetrahymena thermophila PE=... [more]
TBA_TETPY4.154e-1792.86Tubulin alpha chain OS=Tetrahymena pyriformis PE=3... [more]
TBA_OCTVU4.154e-1792.86Tubulin alpha chain (Fragment) OS=Octopus vulgaris... [more]
TBA_LYTPI4.154e-1792.86Tubulin alpha chain (Fragment) OS=Lytechinus pictu... [more]
TBA_LEPDS4.154e-1792.86Tubulin alpha chain OS=Lepidoglyphus destructor PE... [more]
TBA_HAECO4.154e-1792.86Tubulin alpha chain OS=Haemonchus contortus PE=2 S... [more]
TBA_ENTDO4.154e-1792.86Tubulin alpha chain OS=Enteroctopus dofleini PE=2 ... [more]
TBA_CHLVU4.154e-1792.86Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA ... [more]
TBA_CANAL4.154e-1792.86Tubulin alpha chain OS=Candida albicans GN=TUB1 PE... [more]

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Properties
Property NameValue
Genbank descriptionC02012A04SK IF1 Citrus clementina cDNA clone C02012A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289349 ID=CX289349; Name=CX289349; organism=Citrus clementina; type=EST; length=404bp
AATTGATCAAAAGTTTGATTTGATGTACTCGAAGAGGGCGTTTGTGCATT
GGTATGTGGGTGAAGGCATGGAGGAAGGAGAGTTTTCGGAGGCTAGAGAG
GATTTGGCTGCACTTGAGAAGGATTACGAGGAAGTTGGTGCTGAGTCTGC
TGACGGAGAAGAAGAAGAAGGAGACGAGTACTAGGCAGTGATATTGGATT
TGTTCTTCTGCCAATGGACTCATTGGTCTGCCCTCGCTATAATGGATGAT
ACCAGACTCATATGTAGCCGAACCTATGCTCTTTTTGCCTCTTTTTCGTG
TTATATATTAGGCCCAAATGAGTTAACAAAATTTGCACTGTTTTCAACCT
TTATTTATTATATATTTGAGGCACAAAAAGCTTTTATAGTAAAAAAAAAA
AAAA
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