CX289349

Overview
NameCX289349
Unique NameCX289349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289349_ssr157 microsatellite CX289349_ssr157:157..168. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA_BOMMO (Tubulin alpha chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBAT_ONCMY (Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA8_RAT (Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba8 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA8_MOUSE (Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA8_HUMAN (Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  266 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 307
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA8_BOVIN (Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA3_RAT (Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba3a PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA3_MOUSE (Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA3_DROME (Tubulin alpha-3 chain OS=Drosophila melanogaster GN=alphaTub84D PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
The following BLAST results are available for this feature:
BLAST of CX289349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TBA_BOMMO4.154e-1792.86Tubulin alpha chain OS=Bombyx mori PE=2 SV=1[more]
TBAT_ONCMY4.154e-1792.86Tubulin alpha chain, testis-specific OS=Oncorhynch... [more]
TBA8_RAT4.154e-1792.86Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA8_MOUSE4.154e-1792.86Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=... [more]
TBA8_HUMAN4.154e-1792.86Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=... [more]
TBA8_CHICK4.154e-1792.86Tubulin alpha-8 chain (Fragment) OS=Gallus gallus ... [more]
TBA8_BOVIN4.154e-1792.86Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 ... [more]
TBA3_RAT4.154e-1792.86Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA3_MOUSE4.154e-1792.86Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE... [more]
TBA3_DROME4.154e-1792.86Tubulin alpha-3 chain OS=Drosophila melanogaster G... [more]

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Properties
Property NameValue
Genbank descriptionC02012A04SK IF1 Citrus clementina cDNA clone C02012A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289349 ID=CX289349; Name=CX289349; organism=Citrus clementina; type=EST; length=404bp
AATTGATCAAAAGTTTGATTTGATGTACTCGAAGAGGGCGTTTGTGCATT
GGTATGTGGGTGAAGGCATGGAGGAAGGAGAGTTTTCGGAGGCTAGAGAG
GATTTGGCTGCACTTGAGAAGGATTACGAGGAAGTTGGTGCTGAGTCTGC
TGACGGAGAAGAAGAAGAAGGAGACGAGTACTAGGCAGTGATATTGGATT
TGTTCTTCTGCCAATGGACTCATTGGTCTGCCCTCGCTATAATGGATGAT
ACCAGACTCATATGTAGCCGAACCTATGCTCTTTTTGCCTCTTTTTCGTG
TTATATATTAGGCCCAAATGAGTTAACAAAATTTGCACTGTTTTCAACCT
TTATTTATTATATATTTGAGGCACAAAAAGCTTTTATAGTAAAAAAAAAA
AAAA
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