CX289349

Overview
NameCX289349
Unique NameCX289349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  266 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 307          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA3C_HUMAN (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA2_SCHPO (Tubulin alpha-2 chain OS=Schizosaccharomyces pombe GN=tub1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE+DY
Sbjct:  391 LDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA2_PATVU (Tubulin alpha-2/alpha-4 chain OS=Patella vulgata GN=TUB2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1_SCHPO (Tubulin alpha-1 chain OS=Schizosaccharomyces pombe GN=nda2 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE+DY
Sbjct:  395 LDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 436          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1_PARLI (Tubulin alpha-1 chain OS=Paracentrotus lividus PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLA+LEKDY
Sbjct:  397 LDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLASLEKDY 438          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE+DY
Sbjct:  391 LDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1_DROME (Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1_APLCA (Tubulin alpha-1 chain OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432          
The following BLAST results are available for this feature:
BLAST of CX289349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TBA3_CHICK4.154e-1792.86Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBA3C_HUMAN4.154e-1792.86Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C... [more]
TBA2_SCHPO4.154e-1792.86Tubulin alpha-2 chain OS=Schizosaccharomyces pombe... [more]
TBA2_PATVU4.154e-1792.86Tubulin alpha-2/alpha-4 chain OS=Patella vulgata G... [more]
TBA1_SCHPO4.154e-1792.86Tubulin alpha-1 chain OS=Schizosaccharomyces pombe... [more]
TBA1_PARLI4.154e-1792.86Tubulin alpha-1 chain OS=Paracentrotus lividus PE=... [more]
TBA1_NEUCR4.154e-1792.86Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]
TBA1_EMENI4.154e-1792.86Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBA1_DROME4.154e-1792.86Tubulin alpha-1 chain OS=Drosophila melanogaster G... [more]
TBA1_APLCA4.154e-1792.86Tubulin alpha-1 chain OS=Aplysia californica PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC02012A04SK IF1 Citrus clementina cDNA clone C02012A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289349 ID=CX289349; Name=CX289349; organism=Citrus clementina; type=EST; length=404bp
AATTGATCAAAAGTTTGATTTGATGTACTCGAAGAGGGCGTTTGTGCATT
GGTATGTGGGTGAAGGCATGGAGGAAGGAGAGTTTTCGGAGGCTAGAGAG
GATTTGGCTGCACTTGAGAAGGATTACGAGGAAGTTGGTGCTGAGTCTGC
TGACGGAGAAGAAGAAGAAGGAGACGAGTACTAGGCAGTGATATTGGATT
TGTTCTTCTGCCAATGGACTCATTGGTCTGCCCTCGCTATAATGGATGAT
ACCAGACTCATATGTAGCCGAACCTATGCTCTTTTTGCCTCTTTTTCGTG
TTATATATTAGGCCCAAATGAGTTAACAAAATTTGCACTGTTTTCAACCT
TTATTTATTATATATTTGAGGCACAAAAAGCTTTTATAGTAAAAAAAAAA
AAAA
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