CX289349

Overview
NameCX289349
Unique NameCX289349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289349_ssr157 microsatellite CX289349_ssr157:157..168. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA4A_MACFA (Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA4A_HUMAN (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID KFDLMY+KRAFVHWYVGEGMEEGEFSE REDLAALEKDY
Sbjct:  386 IDHKFDLMYAKRAFVHWYVGEGMEEGEFSEVREDLAALEKDY 427
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1_PELFA (Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            ID KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDL ALEKDY
Sbjct:  391 IDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLVALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1_CHICK (Tubulin alpha-1 chain (Fragment) OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  352 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 393
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1D_BOVIN (Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1C_RAT (Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tuba1c PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1C_MOUSE (Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1C_HUMAN (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
The following BLAST results are available for this feature:
BLAST of CX289349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TBA4A_MACFA7.086e-1790.48Tubulin alpha-4A chain OS=Macaca fascicularis GN=T... [more]
TBA4A_HUMAN7.086e-1790.48Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A P... [more]
TBA4A_BOVIN7.086e-1790.48Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=... [more]
TBA1_STYLE7.086e-1792.86Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA1_PELFA7.086e-1792.86Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TU... [more]
TBA1_CHICK7.086e-1790.48Tubulin alpha-1 chain (Fragment) OS=Gallus gallus ... [more]
TBA1D_BOVIN7.086e-1790.48Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=... [more]
TBA1C_RAT7.086e-1790.48Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tub... [more]
TBA1C_MOUSE7.086e-1790.48Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c P... [more]
TBA1C_HUMAN7.086e-1790.48Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]

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Properties
Property NameValue
Genbank descriptionC02012A04SK IF1 Citrus clementina cDNA clone C02012A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289349 ID=CX289349; Name=CX289349; organism=Citrus clementina; type=EST; length=404bp
AATTGATCAAAAGTTTGATTTGATGTACTCGAAGAGGGCGTTTGTGCATT
GGTATGTGGGTGAAGGCATGGAGGAAGGAGAGTTTTCGGAGGCTAGAGAG
GATTTGGCTGCACTTGAGAAGGATTACGAGGAAGTTGGTGCTGAGTCTGC
TGACGGAGAAGAAGAAGAAGGAGACGAGTACTAGGCAGTGATATTGGATT
TGTTCTTCTGCCAATGGACTCATTGGTCTGCCCTCGCTATAATGGATGAT
ACCAGACTCATATGTAGCCGAACCTATGCTCTTTTTGCCTCTTTTTCGTG
TTATATATTAGGCCCAAATGAGTTAACAAAATTTGCACTGTTTTCAACCT
TTATTTATTATATATTTGAGGCACAAAAAGCTTTTATAGTAAAAAAAAAA
AAAA
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