CX289349

Overview
NameCX289349
Unique NameCX289349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1C_CRIGR (Tubulin alpha-1C chain OS=Cricetulus griseus GN=TUBA1C PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1C_BOVIN (Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1B_RAT (Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tuba1b PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1B_PIG (Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1B_MOUSE (Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1B_MERUN (Tubulin alpha-1B chain OS=Meriones unguiculatus GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1B_MACFA (Tubulin alpha-1B chain OS=Macaca fascicularis GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1B_HUMAN (Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1B_CRIGR (Tubulin alpha-1B chain OS=Cricetulus griseus GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
[Close]
BLAST of CX289349 vs. ExPASy Swiss-Prot
Match: TBA1B_BOVIN (Tubulin alpha-1B chain OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.086e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 IDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 127
            +D KFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDY
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
The following BLAST results are available for this feature:
BLAST of CX289349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TBA1C_CRIGR7.086e-1790.48Tubulin alpha-1C chain OS=Cricetulus griseus GN=TU... [more]
TBA1C_BOVIN7.086e-1790.48Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=... [more]
TBA1B_RAT7.086e-1790.48Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tub... [more]
TBA1B_PIG7.086e-1790.48Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=... [more]
TBA1B_MOUSE7.086e-1790.48Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b P... [more]
TBA1B_MERUN7.086e-1790.48Tubulin alpha-1B chain OS=Meriones unguiculatus GN... [more]
TBA1B_MACFA7.086e-1790.48Tubulin alpha-1B chain OS=Macaca fascicularis GN=T... [more]
TBA1B_HUMAN7.086e-1790.48Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B P... [more]
TBA1B_CRIGR7.086e-1790.48Tubulin alpha-1B chain OS=Cricetulus griseus GN=TU... [more]
TBA1B_BOVIN7.086e-1790.48Tubulin alpha-1B chain OS=Bos taurus PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC02012A04SK IF1 Citrus clementina cDNA clone C02012A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289349 ID=CX289349; Name=CX289349; organism=Citrus clementina; type=EST; length=404bp
AATTGATCAAAAGTTTGATTTGATGTACTCGAAGAGGGCGTTTGTGCATT
GGTATGTGGGTGAAGGCATGGAGGAAGGAGAGTTTTCGGAGGCTAGAGAG
GATTTGGCTGCACTTGAGAAGGATTACGAGGAAGTTGGTGCTGAGTCTGC
TGACGGAGAAGAAGAAGAAGGAGACGAGTACTAGGCAGTGATATTGGATT
TGTTCTTCTGCCAATGGACTCATTGGTCTGCCCTCGCTATAATGGATGAT
ACCAGACTCATATGTAGCCGAACCTATGCTCTTTTTGCCTCTTTTTCGTG
TTATATATTAGGCCCAAATGAGTTAACAAAATTTGCACTGTTTTCAACCT
TTATTTATTATATATTTGAGGCACAAAAAGCTTTTATAGTAAAAAAAAAA
AAAA
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