CX289350

Overview
NameCX289350
Unique NameCX289350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX289350 vs. ExPASy Swiss-Prot
Match: KCS3_ARATH (3-ketoacyl-CoA synthase 3 OS=Arabidopsis thaliana GN=KCS3 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.040e-28
Identity = 58/128 (45.31%), Postives = 87/128 (67.97%), Query Frame = 2 
Query:    5 TPSLSAMLINQYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAIXXXXXXXXXXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGKV 388
            TPSLSA +IN YK+R +IK FNL+ MGCSA +ISID+ +++ + + N  A+VV++E ++PN+Y GN R+M+L NCLFR GG A+           A ++L  +VRTH GA D ++    ++ED+ G +
Sbjct:  184 TPSLSARIINHYKMREDIKVFNLTAMGCSASVISIDIVKNIFKTYKNKLALVVTSESLSPNWYSGNNRSMILANCLFRSGGCAVLLTNKRSLSRRAMFKLRCLVRTHHGARDDSFNACVQKEDELGHI 311
The following BLAST results are available for this feature:
BLAST of CX289350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
KCS3_ARATH1.040e-2845.313-ketoacyl-CoA synthase 3 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC02012A05SK IF1 Citrus clementina cDNA clone C02012A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289350 ID=CX289350; Name=CX289350; organism=Citrus clementina; type=EST; length=390bp
GCCGACGCCGTCGCTATCGGCCATGTTGATTAACCAGTACAAGCTGAGGA
GTAACATCAAGAGCTTCAATCTTTCGGGTATGGGCTGCAGTGCCGGGCTT
ATATCCATCGACTTAGCTCGGGATCTTCTACAAGTGCATCCGAATTCAAA
CGCTGTCGTTGTGAGCACGGAGATCATTACACCGAACTACTACCAAGGGA
ATGAACGAGCCATGCTCCTTCCGAATTGCCTCTTCCGCATGGGTGGAGCC
GCGATCTTGTTATCGAACCGGAGGCGCAACCGTTCCCGAGCCAAGTACCG
GCTGGTTCACGTGGTTCGAACCCACAAAGGAGCTGACGACAAGGCTTATC
GCTGCGTGTTTGAAGAGGAAGACAAAGAGGGCAAAGTAGG
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