CX289353

Overview
NameCX289353
Unique NameCX289353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length370
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289353 vs. ExPASy Swiss-Prot
Match: LATS1_HUMAN (Serine/threonine-protein kinase LATS1 OS=Homo sapiens GN=LATS1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.950e-11
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1
Query:    1 VHWKNHLKFPEEARLTPEAKDLICRLLCDVEHRLGTLGSEQIKAHPWFKDIAWDK-LYEMEAAYKPEVNGVLDTQNFMKFD 240
            ++W+  L  P +A+L+PEA DLI +L    E RLG  G+++IKAHP+FK I +   L +  A+Y P++    DT NF   D
Sbjct:  963 INWQTSLHIPPQAKLSPEASDLIIKLCRGPEDRLGKNGADEIKAHPFFKTIDFSSDLRQQSASYIPKITHPTDTSNFDPVD 1043          
BLAST of CX289353 vs. ExPASy Swiss-Prot
Match: ROCK1_RAT (Rho-associated protein kinase 1 OS=Rattus norvegicus GN=Rock1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.546e-11
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   10 KNHLKFPEEARLTPEAKDLICRLLCDVEHRLGTLGSEQIKAHPWFKD--IAWDKLYEMEAAYKPEVNGVLDTQNFMKFDEVESQTPKRTGSGPMRKTMLTPKDLSFVGYTY 336
            KN L FP++  ++ EAK+LIC  L D E RLG  G E+IK H +FK+   AW+ L +  A   P+++  +DT NF   +E +        + P+ K  +    L FVG+TY
Sbjct:  294 KNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQWAWETLRDTVAPVVPDLSSDIDTSNFDDLEEDKGDEE----TFPIPKAFV-GNQLPFVGFTY 399          
BLAST of CX289353 vs. ExPASy Swiss-Prot
Match: ROCK1_RABIT (Rho-associated protein kinase 1 OS=Oryctolagus cuniculus GN=ROCK1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.546e-11
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   10 KNHLKFPEEARLTPEAKDLICRLLCDVEHRLGTLGSEQIKAHPWFKD--IAWDKLYEMEAAYKPEVNGVLDTQNFMKFDEVESQTPKRTGSGPMRKTMLTPKDLSFVGYTY 336
            KN L FP++  ++ EAK+LIC  L D E RLG  G E+IK H +FK+   AW+ L +  A   P+++  +DT NF   +E +        + P+ K  +    L FVG+TY
Sbjct:  294 KNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQWAWETLRDTVAPVVPDLSSDIDTSNFDDLEEDKGDEE----TFPIPKAFV-GNQLPFVGFTY 399          
BLAST of CX289353 vs. ExPASy Swiss-Prot
Match: ROCK1_MOUSE (Rho-associated protein kinase 1 OS=Mus musculus GN=Rock1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.546e-11
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   10 KNHLKFPEEARLTPEAKDLICRLLCDVEHRLGTLGSEQIKAHPWFKD--IAWDKLYEMEAAYKPEVNGVLDTQNFMKFDEVESQTPKRTGSGPMRKTMLTPKDLSFVGYTY 336
            KN L FP++  ++ EAK+LIC  L D E RLG  G E+IK H +FK+   AW+ L +  A   P+++  +DT NF   +E +        + P+ K  +    L FVG+TY
Sbjct:  294 KNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQWAWETLRDTVAPVVPDLSSDIDTSNFDDLEEDKGDEE----TFPIPKAFV-GNQLPFVGFTY 399          
BLAST of CX289353 vs. ExPASy Swiss-Prot
Match: MRCKB_RAT (Serine/threonine-protein kinase MRCK beta OS=Rattus norvegicus GN=Cdc42bpb PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.673e-11
Identity = 40/121 (33.06%), Postives = 59/121 (48.76%), Query Frame = 1
Query:   10 KNHLKFPEEAR-LTPEAKDLICRLLCDVEHRLGTLGSEQIKAHPWFKDIAWDKLYEMEAAYKPEVNGVLDTQNFMKFDEVESQTPKRTGSGPMRKTMLTPKDLSFVGYTYKNFEAVKDKRS 369
            +   +FP     ++ EAKDLI RL+C  E RLG  G E  K H +F+ + W+ +  +EA Y P+V+   DT NF   D+V           P   T  +   L F+G+T+       D+ S
Sbjct:  297 EERFQFPSHVTDVSEEAKDLIQRLICSRERRLGQNGIEDFKKHAFFEGLNWENIRNLEAPYIPDVSSPSDTSNFDVDDDVLRNIEILP---PGSHTGFSGLHLPFIGFTFTTESCFSDRGS 414          
BLAST of CX289353 vs. ExPASy Swiss-Prot
Match: LATS1_MOUSE (Serine/threonine-protein kinase LATS1 OS=Mus musculus GN=Lats1 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.673e-11
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    7 WKNHLKFPEEARLTPEAKDLICRLLCDVEHRLGTLGSEQIKAHPWFKDIAWDK-LYEMEAAYKPEVNGVLDTQNFMKFD 240
            W+  L  P +A+L+PEA DLI +L    E RLG  G+++IKAHP+FK I +   L +  A+Y P++    DT NF   D
Sbjct:  964 WQTSLHIPPQAKLSPEASDLIIKLCRGPEDRLGKNGADEIKAHPFFKTIDFSSDLRQQSASYIPKITHPTDTSNFDPVD 1042          
BLAST of CX289353 vs. ExPASy Swiss-Prot
Match: DMPK_MOUSE (Myotonin-protein kinase OS=Mus musculus GN=Dmpk PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.409e-11
Identity = 42/118 (35.59%), Postives = 58/118 (49.15%), Query Frame = 1
Query:    1 VHWKNHLKFPEEARLTPE-AKDLICRLLCDVEHRLGTLGSEQIKAHPWFKDIAWDKLYEMEAAYKPEVNGVLDTQNFMKFDEVESQTPKRTGSG-----PMRKTMLTPKDLSFVGYTY 336
            VH++ HL  P    + PE A+DLI  LLC  E RLG  G+   + HP+F  + W+ L +    + P+  G  DT N   FD VE +       G      M++ M     L FVGY+Y
Sbjct:  291 VHYREHLSLPLADTVVPEEAQDLIRGLLCPAEIRLGRGGAGDFQKHPFFFGLDWEGLRDSVPPFTPDFEGATDTCN---FDVVEDRLTAMVSGGGETLSDMQEDMPLGVRLPFVGYSY 405          
The following BLAST results are available for this feature:
BLAST of CX289353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
LATS1_HUMAN1.950e-1141.98Serine/threonine-protein kinase LATS1 OS=Homo sapi... [more]
ROCK1_RAT2.546e-1137.84Rho-associated protein kinase 1 OS=Rattus norvegic... [more]
ROCK1_RABIT2.546e-1137.84Rho-associated protein kinase 1 OS=Oryctolagus cun... [more]
ROCK1_MOUSE2.546e-1137.84Rho-associated protein kinase 1 OS=Mus musculus GN... [more]
MRCKB_RAT5.673e-1133.06Serine/threonine-protein kinase MRCK beta OS=Rattu... [more]
LATS1_MOUSE5.673e-1143.04Serine/threonine-protein kinase LATS1 OS=Mus muscu... [more]
DMPK_MOUSE7.409e-1135.59Myotonin-protein kinase OS=Mus musculus GN=Dmpk PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02012A08SK IF1 Citrus clementina cDNA clone C02012A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289353 ID=CX289353; Name=CX289353; organism=Citrus clementina; type=EST; length=370bp
GTGCATTGGAAAAATCACTTGAAGTTTCCGGAGGAGGCAAGATTGACGCC
TGAAGCAAAGGATCTTATTTGTAGGTTGCTTTGTGATGTTGAGCATAGGC
TTGGAACTCTTGGGTCTGAGCAAATTAAAGCTCATCCTTGGTTCAAAGAT
ATTGCATGGGACAAACTCTATGAAATGGAAGCAGCATATAAACCAGAGGT
CAATGGTGTACTCGATACCCAAAACTTCATGAAATTTGATGAGGTGGAGT
CCCAAACACCAAAAAGAACAGGATCTGGACCCATGAGGAAGACGATGTTA
ACTCCTAAAGATCTCAGTTTTGTTGGGTACACATATAAGAATTTTGAGGC
TGTCAAAGATAAAAGGAGTA
back to top