CX289365

Overview
NameCX289365
Unique NameCX289365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length374
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289365 vs. ExPASy Swiss-Prot
Match: ACBD6_DANRE (Acyl-CoA-binding domain-containing protein 6 OS=Danio rerio GN=acbd6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.623e-13
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 2
Query:   53 LQEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEE 301
            L+ EFE  A++ + L ++ + E  L LY  +KQ  VG  NT++PG F+   + KW AWK +   S E+AM +Y+T V  L  E
Sbjct:   60 LENEFESAADRVRDLVQTASREQLLYLYARFKQVKVGKCNTSKPGFFDFEGQRKWSAWKQLGDMSAEQAMQEYVTCVHALDPE 142          
BLAST of CX289365 vs. ExPASy Swiss-Prot
Match: ACBD6_XENTR (Acyl-CoA-binding domain-containing protein 6 OS=Xenopus tropicalis GN=acbd6 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.038e-13
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 2
Query:   23 EKNKRKGEMGLQEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEE 301
            E+   K E  LQ +FE+ A+  + +    + E  L LY  YKQ  VG  NT +PG F+   + KW+AWKA+   S ++AM++YI  VK+L  +
Sbjct:   22 EQWDEKTEEELQGQFEQAAKHVQNVASVASTEQLLFLYARYKQVKVGRCNTPKPGFFDYEGKKKWEAWKALGDYSCQQAMNEYIETVKKLDPD 114          
BLAST of CX289365 vs. ExPASy Swiss-Prot
Match: ACBD6_XENLA (Acyl-CoA-binding domain-containing protein 6 OS=Xenopus laevis GN=acbd6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.885e-13
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 2
Query:   32 KRKGEMGLQEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEE 301
            + K E  LQ +FE+ A+  + +    + E  L LY  YKQ  VG  NT +PG F+   + KW+AWKA+   S ++AM++YI  VK+L  +
Sbjct:   25 EEKTEEELQCQFEQAAKHVQNVASVASTEQLLYLYARYKQVKVGRCNTPKPGFFDYEGKKKWEAWKALGDYSHQQAMTEYIETVKKLDPD 114          
BLAST of CX289365 vs. ExPASy Swiss-Prot
Match: ACBP_MANSE (Acyl-CoA-binding protein homolog OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.996e-12
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 2
Query:   47 MGLQEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVN-TNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEEAGV 310
            M LQE+F++ A   + L    ++ + L LY L+KQA+ G  +  NRPG+ +++ +AK+DAW    G SKE+A   YI KV+ L    G+
Sbjct:    1 MSLQEQFDQAASNVRNLKSLPSDNDLLELYALFKQASAGDADPANRPGLLDLKGKAKFDAWHKKAGLSKEDAQKAYIAKVESLIASLGL 89          
BLAST of CX289365 vs. ExPASy Swiss-Prot
Match: ACBP2_DIGLA (Acyl-CoA-binding protein 2 (Fragment) OS=Digitalis lanata PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.111e-12
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 2
Query:   53 LQEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPV 169
            L+EEFEEHAEKAKTLPE+T++ENKL LYGLYKQATVG V
Sbjct:    2 LKEEFEEHAEKAKTLPENTSSENKLTLYGLYKQATVGNV 40          
BLAST of CX289365 vs. ExPASy Swiss-Prot
Match: ACBD5_XENTR (Acyl-CoA-binding domain-containing protein 5 OS=Xenopus tropicalis GN=acbd5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.111e-12
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 2
Query:   56 QEEFEEHAEKAKTLPES----TTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEEAGVS 313
            Q  FE      ++LP++     +NE  L  Y  YKQAT+GP NT RPG ++   R KWDAW ++   SKE+AM  Y+ ++K++ E   V+
Sbjct:    9 QTRFEAAVSVIQSLPKNGSFQPSNEMMLKFYSFYKQATLGPCNTPRPGFWDPVGRYKWDAWNSLGDMSKEDAMIAYVDEMKKILETMPVT 98          
BLAST of CX289365 vs. ExPASy Swiss-Prot
Match: ACBD6_BOVIN (Acyl-CoA-binding domain-containing protein 6 OS=Bos taurus GN=ACBD6 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.675e-12
Identity = 35/87 (40.23%), Postives = 48/87 (55.17%), Query Frame = 2
Query:   32 KRKGEMGLQEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQL 292
            K +    L E FE+ AE  + L +  + E  L LY  YKQ  VG  NT +P  F+   + KW+AWKA+   S  +AM +YI  VK+L
Sbjct:   35 KIEASRSLPELFEKAAEHLQGLVQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKL 121          
BLAST of CX289365 vs. ExPASy Swiss-Prot
Match: ACBD5_XENLA (Acyl-CoA-binding domain-containing protein 5 OS=Xenopus laevis GN=acbd5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.675e-12
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 2
Query:   56 QEEFEEHAEKAKTLPES----TTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEEAGVS 313
            Q  FE      ++LP++     +NE  L  Y  YKQAT+GP NT RPG ++   R KWDAW ++   SKE+AM  Y+ ++K++ E   V+
Sbjct:    9 QTRFEAAVSVIQSLPKNGSFQPSNEMMLKFYSFYKQATLGPCNTARPGFWDPVGRYKWDAWNSLGDMSKEDAMIAYVDEMKKIIETMPVT 98          
BLAST of CX289365 vs. ExPASy Swiss-Prot
Match: ACBD5_CHICK (Acyl-CoA-binding domain-containing protein 5 OS=Gallus gallus GN=ACBD5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 2
Query:   65 FEEHAEKAKTLPES----TTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQE 298
            FE   +  ++LP++     TNE  L  Y  YKQAT GP N  RPG ++   R KWDAW A+   SKEEAM  Y+ ++K++ E
Sbjct:   12 FEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATQGPCNIPRPGFWDPIGRYKWDAWSALGDMSKEEAMIAYVEEMKKILE 93          
BLAST of CX289365 vs. ExPASy Swiss-Prot
Match: ACBP_DICDI (Acyl-CoA-binding protein OS=Dictyostelium discoideum GN=acbA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.487e-11
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 2
Query:   65 FEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQL 292
            FEE A+K K   +  +N+  L LYGLYKQ T G  N + P    +  +AK++AW A++G SKE+A + Y+   +QL
Sbjct:    4 FEEAAQKVKEFTKKPSNDELLSLYGLYKQGTDGDCNISEPWAVQVEAKAKYNAWNALKGTSKEDAKAKYVALYEQL 79          
The following BLAST results are available for this feature:
BLAST of CX289365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
ACBD6_DANRE4.623e-1339.76Acyl-CoA-binding domain-containing protein 6 OS=Da... [more]
ACBD6_XENTR6.038e-1338.71Acyl-CoA-binding domain-containing protein 6 OS=Xe... [more]
ACBD6_XENLA7.885e-1338.89Acyl-CoA-binding domain-containing protein 6 OS=Xe... [more]
ACBP_MANSE2.996e-1239.33Acyl-CoA-binding protein homolog OS=Manduca sexta ... [more]
ACBP2_DIGLA5.111e-1284.62Acyl-CoA-binding protein 2 (Fragment) OS=Digitalis... [more]
ACBD5_XENTR5.111e-1240.00Acyl-CoA-binding domain-containing protein 5 OS=Xe... [more]
ACBD6_BOVIN6.675e-1240.23Acyl-CoA-binding domain-containing protein 6 OS=Bo... [more]
ACBD5_XENLA6.675e-1240.00Acyl-CoA-binding domain-containing protein 5 OS=Xe... [more]
ACBD5_CHICK1.139e-1143.90Acyl-CoA-binding domain-containing protein 5 OS=Ga... [more]
ACBP_DICDI1.487e-1142.11Acyl-CoA-binding protein OS=Dictyostelium discoide... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02012B12SK IF1 Citrus clementina cDNA clone C02012B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289365 ID=CX289365; Name=CX289365; organism=Citrus clementina; type=EST; length=374bp
ACATCTCAATTCTCAAATCTCAGAGAAAAACAAAAGAAAGGGGGAAATGG
GTTTGCAGGAGGAATTTGAGGAGCATGCTGAGAAAGCAAAGACCCTGCCA
GAGTCGACAACAAACGAAAACAAGCTTATCCTTTATGGTCTCTACAAGCA
AGCCACTGTTGGACCAGTAAACACAAACAGACCTGGAATGTTTAACATGA
GGGACAGAGCTAAGTGGGATGCATGGAAGGCTGTCGAAGGGAAATCTAAG
GAGGAAGCAATGAGTGACTACATTACCAAGGTAAAGCAGTTGCAGGAGGA
AGCTGGTGTTTCTGCCTGACCTTCCGCTGTATGCTTATCTTCCAAATCTC
ATGATTCGGAGAAGTCAAAATAAG
back to top