CX289365

Overview
NameCX289365
Unique NameCX289365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length374
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig188 contig Ccv1_Contig188:1..374. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289365 vs. ExPASy Swiss-Prot
Match: ACBD6_MOUSE (Acyl-CoA-binding domain-containing protein 6 OS=Mus musculus GN=Acbd6 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.537e-11
Identity = 33/85 (38.82%), Postives = 47/85 (55.29%), Query Frame = 2
Query:   38 KGEMGLQEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQL 292
            +G   L E FE+ A   + L +  + E  L LY  +KQ  VG  NT +P  F+   + KW+AWKA+   S  +AM +YI  VK+L
Sbjct:   37 EGTRSLAELFEKAAAHVQGLVQVASREQLLYLYARFKQVKVGNCNTPKPNFFDFEGKQKWEAWKALGDSSPSQAMQEYIAAVKKL 121          
BLAST of CX289365 vs. ExPASy Swiss-Prot
Match: ACBD5_PONAB (Acyl-CoA-binding domain-containing protein 5 OS=Pongo abelii GN=ACBD5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.537e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 2
Query:   56 QEEFEEHAEKAKTLPES----TTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQE 298
            +  FE   +  ++LP++     TNE  L  Y  YKQAT GP   +RPG ++   R KWDAW ++   +KEEAMS Y+ ++K++ E
Sbjct:   44 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMSAYVEEMKKIIE 128          
BLAST of CX289365 vs. ExPASy Swiss-Prot
Match: DBIL5_BOVIN (Diazepam-binding inhibitor-like 5 OS=Bos taurus GN=DBIL5 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.651e-11
Identity = 35/85 (41.18%), Postives = 51/85 (60.00%), Query Frame = 2
Query:   56 QEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQE-EAG 307
            Q EFE      K L    +++ KL++Y  YKQAT G  N   P   +++ +AKW+AW   +G SK +AM  YI KV++L++ EAG
Sbjct:    3 QVEFEMACAAIKQLKGPVSDQEKLLVYSYYKQATQGDCNIPAPPATDLKAKAKWEAWNENKGMSKMDAMRIYIAKVEELKKNEAG 87          
BLAST of CX289365 vs. ExPASy Swiss-Prot
Match: ACBD6_HUMAN (Acyl-CoA-binding domain-containing protein 6 OS=Homo sapiens GN=ACBD6 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.380e-11
Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 2
Query:   53 LQEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQL 292
            L E FE+ A   + L +  + E  L LY  YKQ  VG  NT +P  F+   + KW+AWKA+   S  +AM +YI  VK+L
Sbjct:   42 LAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKL 121          
BLAST of CX289365 vs. ExPASy Swiss-Prot
Match: ACBD4_PONAB (Acyl-CoA-binding domain-containing protein 4 OS=Pongo abelii GN=ACBD4 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.639e-11
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 2
Query:   32 KRKGEMGLQEEFEEHAEKAKTLPES----TTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEE 301
            K   E   Q++F+      + LP++     + E  L  Y  YKQAT+GP    RPG ++   R KWDAW ++   S+EEAMS YIT++K + ++
Sbjct:    5 KESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQK 98          
BLAST of CX289365 vs. ExPASy Swiss-Prot
Match: ACBD4_HUMAN (Acyl-CoA-binding domain-containing protein 4 OS=Homo sapiens GN=ACBD4 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.639e-11
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 2
Query:   32 KRKGEMGLQEEFEEHAEKAKTLPES----TTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEE 301
            K   E   Q++F+      + LP++     + E  L  Y  YKQAT+GP    RPG ++   R KWDAW ++   S+EEAMS YIT++K + ++
Sbjct:    5 KESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQK 98          
The following BLAST results are available for this feature:
BLAST of CX289365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
ACBD6_MOUSE2.537e-1138.82Acyl-CoA-binding domain-containing protein 6 OS=Mu... [more]
ACBD5_PONAB2.537e-1140.00Acyl-CoA-binding domain-containing protein 5 OS=Po... [more]
DBIL5_BOVIN5.651e-1141.18Diazepam-binding inhibitor-like 5 OS=Bos taurus GN... [more]
ACBD6_HUMAN7.380e-1141.25Acyl-CoA-binding domain-containing protein 6 OS=Ho... [more]
ACBD4_PONAB9.639e-1137.23Acyl-CoA-binding domain-containing protein 4 OS=Po... [more]
ACBD4_HUMAN9.639e-1137.23Acyl-CoA-binding domain-containing protein 4 OS=Ho... [more]

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Properties
Property NameValue
Genbank descriptionC02012B12SK IF1 Citrus clementina cDNA clone C02012B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289365 ID=CX289365; Name=CX289365; organism=Citrus clementina; type=EST; length=374bp
ACATCTCAATTCTCAAATCTCAGAGAAAAACAAAAGAAAGGGGGAAATGG
GTTTGCAGGAGGAATTTGAGGAGCATGCTGAGAAAGCAAAGACCCTGCCA
GAGTCGACAACAAACGAAAACAAGCTTATCCTTTATGGTCTCTACAAGCA
AGCCACTGTTGGACCAGTAAACACAAACAGACCTGGAATGTTTAACATGA
GGGACAGAGCTAAGTGGGATGCATGGAAGGCTGTCGAAGGGAAATCTAAG
GAGGAAGCAATGAGTGACTACATTACCAAGGTAAAGCAGTTGCAGGAGGA
AGCTGGTGTTTCTGCCTGACCTTCCGCTGTATGCTTATCTTCCAAATCTC
ATGATTCGGAGAAGTCAAAATAAG
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