CX289367

Overview
NameCX289367
Unique NameCX289367
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length370
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289367 vs. ExPASy Swiss-Prot
Match: WDR69_MACFA (WD repeat-containing protein 69 OS=Macaca fascicularis GN=WDR69 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 2 
Query:    2 SCRVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 220
            +  +  L +N + TL+ATGS D  A++W+  NG+  CTL  H   I SL +N  GD ++TGS D T +VWD  T
Sbjct:  177 TAEIVCLSFNPQSTLVATGSMDTTAKLWNIQNGEEVCTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADT 250
[Close]
BLAST of CX289367 vs. ExPASy Swiss-Prot
Match: YCY9_SCHPO (Uncharacterized WD repeat-containing protein C1235.09 OS=Schizosaccharomyces pombe GN=SPCC1235.09 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 33/117 (28.21%), Postives = 59/117 (50.43%), Query Frame = 2 
Query:   11 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 361
            +T + WN  G+ LA   + G   I+ ++G    +   +KGP+ SLKW+    YL  GS D T  ++D + ++ +   +  +   LD++W +   F TS  +  + V K+    P+ T
Sbjct:  267 ITGVAWNNSGSFLAYAFFSGVIEIYDSHGSQILSFHNNKGPVLSLKWSGTDTYLAAGSADGTITLFD-QLKQTQYSIDTLASSVLDIEWISFDEFVTSDVEGSLRVYKVDGKAPVST 382
The following BLAST results are available for this feature:
BLAST of CX289367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
WDR69_MACFA1.143e-1143.24WD repeat-containing protein 69 OS=Macaca fascicul... [more]
YCY9_SCHPO1.493e-1128.21Uncharacterized WD repeat-containing protein C1235... [more]

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Properties
Property NameValue
Genbank descriptionC02012C02SK IF1 Citrus clementina cDNA clone C02012C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289367 ID=CX289367; Name=CX289367; organism=Citrus clementina; type=EST; length=370bp
CTCGTGCCGTGTCACAACACTTGATTGGAATGGCGAGGGGACATTACTTG
CGACTGGTTCATATGATGGCCAGGCAAGAATATGGAGTACAAATGGCGAT
CTGAAGTGTACCTTGAGTAAACATAAAGGACCCATATTTTCCCTTAAGTG
GAACAAGAAGGGTGATTACCTTCTCACCGGAAGCTGTGATAAAACTGCAA
TAGTATGGGATGTGAAGACAGAGGAATGGAAACAGCAATTTGAATTTCAT
TCAGGTCCAACGCTTGATGTTGACTGGCGCAATAATGTTTCATTTGCCAC
AAGCTCGACAGACAACATGATATATGTGTGTAAAATTGGGGAAAACCGCC
CTATTAAAACTTTTGCAGGG
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