CX289437

Overview
NameCX289437
Unique NameCX289437
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length435
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289437 vs. ExPASy Swiss-Prot
Match: ODBA_PANTR (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.221e-11
Identity = 33/91 (36.26%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:    4 PMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKDIEKEVRKEVDDAIAKAKESPMPEPSELFTNVY 276
            P ++E  TYR   HS SD  S YR+ DE++   ++  P+ R+R  +L+     E++ K   K+ RK+V +A  +A+  P P P+ LF++VY
Sbjct:  323 PFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPVSRLRHYLLSQGWWDEEQEKAWRKQSRKKVMEAFEQAERKPKPNPNLLFSDVY 413
The following BLAST results are available for this feature:
BLAST of CX289437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ODBA_PANTR8.221e-1136.262-oxoisovalerate dehydrogenase subunit alpha, mito... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02013B11SK IF1 Citrus clementina cDNA clone C02013B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289437 ID=CX289437; Name=CX289437; organism=Citrus clementina; type=EST; length=435bp
GGACCTATGATACTTGAAATGGACACATACAGGTATCATGGTCACTCCAT
GTCTGACCCTGGAAGCACCTACCGTACTCGTGATGAGATCAGTGGTGTGA
GACAGGAGCGTGATCCAATTGAAAGAATAAGAAAGTTAATATTAGCCCAT
GACCTAGCGACAGAGAAAGAGCTAAAGGACATTGAGAAGGAAGTAAGAAA
AGAAGTAGATGATGCCATTGCCAAAGCCAAGGAGAGTCCCATGCCAGAGC
CTTCTGAACTCTTCACAAATGTGTATGTGAAAGGTTATGGAGTTGAGGTA
TTTGGAGCAGACAGGAAAGAAGTTAGAGGCGTGCTTCCATAAATTTGAAC
TTGTCTGAAGAGTTTTGAAACTGAGCAAAACCTTACAACCGTAAACCTTG
TAAAAAGGTACAAACAAACAAGCAATAAGAATTTG
back to top