CX289487

Overview
NameCX289487
Unique NameCX289487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length468
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: CDC48_SOYBN (Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 6.057e-40
Identity = 84/156 (53.85%), Postives = 103/156 (66.03%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH---DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            GCGKT +  A A  C   FISVKGPELL  + G SE  VR+IF KA  +APC+LFFDE DSIA +RG    D  G  DRV+NQ LTE+DG+     VF+  AT+RPD++D ALLRPGRLD+L++   P    R  I K   RK P+A +VDL A+A
Sbjct:  525 GCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPIAKNVDLRALA 680          

HSP 2 Score: 119.013 bits (297), Expect = 1.003e-26
Identity = 65/153 (42.48%), Postives = 91/153 (59.48%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT I  A A      F  + GPE+++K  G SE  +R  F +A   AP ++F DE DSIAPKR   +  V  R+V+Q LT +DG++    V V  AT+RP+ +D AL R GR DR +    P    RL++L++ ++ + L+DDVDLE IA
Sbjct:  252 GSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIA 404          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: CDAT_PLAF7 (Putative cell division cycle ATPase OS=Plasmodium falciparum (isolate 3D7) GN=PF07_0047 PE=3 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 6.057e-40
Identity = 79/154 (51.30%), Postives = 104/154 (67.53%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            GCGKT +  A A  C   FISVKGPELL  + G SE  VRD+F KA AA+PC++FFDE DS+A +R  + N   +DRV+NQ LTE+DG+     +F+ AAT+RPD+LD AL RPGRLD+L++   P  + R  I K I +  PL +DVD+  +A
Sbjct:  978 GCGKTLLAKAIANECKANFISVKGPELLTMWFGESEANVRDLFDKARAASPCIIFFDEIDSLAKERNSNTNNDASDRVINQILTEIDGINEKKTIFIIAATNRPDILDKALTRPGRLDKLIYISLPDLKSRYSIFKAILKNTPLNEDVDIHDMA 1131          

HSP 2 Score: 122.094 bits (305), Expect = 1.185e-27
Identity = 67/153 (43.79%), Postives = 92/153 (60.13%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT I  A A   +     + GPE+++K+IG SEQ +R IF KA+   PC++F DE DSIA KR   N  +  RVV+Q LT +DG++    V V AAT+RP+ +D AL R GR DR +    P  + R +IL   ++K+ L  DV+L  IA
Sbjct:  571 GTGKTSIAKAIANESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASEKTPCIIFIDEIDSIANKRSKSNNELEKRVVSQLLTLMDGLKKNNNVLVLAATNRPNSIDPALRRFGRFDREIEIPVPDEQGRYEILLTKTKKMKLDPDVNLRKIA 723          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: CDC48_EMENI (Cell division control protein 48 OS=Emericella nidulans GN=cdc48 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 7.911e-40
Identity = 87/156 (55.77%), Postives = 104/156 (66.67%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH---DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A  C+  FISVKGPELL+ + G SE  +RDIF KA AAAPC++F DE DSIA  RG    D  G +DRVVNQ LTE+DG+     VFV  AT+RP+ LDAAL+RPGRLD L++   P    R  ILK   RK P+A DVD+E IA
Sbjct:  547 GTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKSRGGSVGDAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDAALVRPGRLDTLVYVPLPDQASREGILKAQLRKTPVASDVDIEFIA 702          

HSP 2 Score: 124.02 bits (310), Expect = 3.118e-28
Identity = 67/153 (43.79%), Postives = 92/153 (60.13%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A      F  + GPE+++K  G SE  +R  F +A   +P ++F DE DSIAPKR   N  V  RVV+Q LT +DG++  + V V AAT+RP+ +D AL R GR DR +    P P  RL+IL + ++ + L +DVDLE IA
Sbjct:  273 GTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDIGIPDPTGRLEILSIHTKNMKLGEDVDLETIA 425          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.033e-39
Identity = 83/154 (53.90%), Postives = 113/154 (73.38%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH-DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   +  FISVKGPELL+K++G SE+ VR++F KA   APC++FFDE DS+AP+RG   ++ VT+RVV+Q LTELDG+E L  V V AAT+RPD++D ALLRPGRL+R ++   P  + R++I K+  R  PLADDV++E +A
Sbjct:  499 GTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKARQVAPCVIFFDEIDSLAPRRGGIGDSHVTERVVSQLLTELDGLEELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNIEELA 652          

HSP 2 Score: 141.354 bits (355), Expect = 1.887e-33
Identity = 75/155 (48.39%), Postives = 97/155 (62.58%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHM 466
            G GKT I  A A      FI + GPE+++KY G SEQ +R+IF +A   AP ++F DE DSIAPKR      V  RVV Q L  +DG+E    V V AAT+RPD +D AL RPGR DR +    P    R +IL++ +RK+PLA+DVDLE +A +
Sbjct:  226 GTGKTLIAKAVANEVDAHFIPISGPEIMSKYYGESEQRLREIFEEAKENAPSIIFIDEIDSIAPKREEVTGEVERRVVAQLLALMDGLEARGDVIVIAATNRPDAIDPALRRPGRFDREIEIGVPDKEGRKEILEIHTRKMPLAEDVDLEELAEL 380          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: CDC48_SCHPO (Cell division cycle protein 48 OS=Schizosaccharomyces pombe GN=cdc48 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 1.033e-39
Identity = 86/155 (55.48%), Postives = 104/155 (67.10%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD--NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A  CS  FISVKGPELL+ + G SE  VRDIF KA AAAPC++F DE DSIA  RG    ++G  DRVVNQ LTE+DGV     VFV  AT+RPD +D AL+RPGRLD+L++   P    R  IL+   R  P+A+DVDL A+A
Sbjct:  541 GTGKTLLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIAKARGASAGDSGGGDRVVNQLLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVA 695          

HSP 2 Score: 127.487 bits (319), Expect = 2.820e-29
Identity = 69/153 (45.10%), Postives = 94/153 (61.44%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A      F  + GPE+++K  G SE  +R  F +A   +P ++F DE DSIAPKR   N  V  RVV+Q LT +DG++  + V V AAT+RP+ +D AL R GR DR +    P P  RL+IL++ ++ + LADDVDLE IA
Sbjct:  268 GTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIA 420          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: CDC48_ENCCU (Cell division control protein 48 OS=Encephalitozoon cuniculi GN=CDC48 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.033e-39
Identity = 79/155 (50.97%), Postives = 110/155 (70.97%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKR-GHD-NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            GCGKT +  A A  C   FIS+KGPELL+ ++G SE  +RD+F++A  AAPC+LFFDE DSIA  R G+D ++G TDR++NQ L+E+DG+     VFV  AT+RPD LD+AL+RPGRLD+L++   P    R+ IL+   +K PL+ ++DL  +A
Sbjct:  525 GCGKTLLAKAVATECKANFISIKGPELLSMWVGESESNIRDLFARARGAAPCVLFFDEIDSIAKARSGNDGSSGATDRMLNQLLSEMDGINQKKNVFVIGATNRPDQLDSALMRPGRLDQLVYIPLPDLDSRVSILQATLKKTPLSPEIDLRQLA 679          

HSP 2 Score: 112.079 bits (279), Expect = 1.226e-24
Identity = 59/152 (38.82%), Postives = 89/152 (58.55%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAI 457
            G GKT I  A A         + GPE+++K  G SE  +R  F +A   +P ++F DE D++APKR      V  R+V+Q LT +DG++  + V V  AT+RP+ +D AL R GR DR +    P    RL+IL++ ++ + +++DVDL AI
Sbjct:  252 GTGKTLIARAIANETGAFLFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDALAPKREKSQGEVERRIVSQLLTLMDGMKARSNVIVLGATNRPNSIDPALRRYGRFDREIEIGVPDETGRLEILRIHTKNMKMSEDVDLVAI 403          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX6_RAT (Peroxisome assembly factor 2 OS=Rattus norvegicus GN=Pex6 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.302e-39
Identity = 84/152 (55.26%), Postives = 105/152 (69.08%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPR-ERLDILKVISRKLPLADDVDL 448
            G GKT +  A A  CSL F+SVKGPEL+N Y+G SE+ VR++F++A AAAPC++FFDE DS+AP RG   D+ GV DRVV+Q L ELDG+     VFV  AT+RPDLLD ALLRPGR D+L+F      R  +L +L  I+RK  L   V L
Sbjct:  745 GTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASEDRASQLRVLSAITRKFKLEASVSL 896          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX6_MOUSE (Peroxisome assembly factor 2 OS=Mus musculus GN=Pex6 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.302e-39
Identity = 84/152 (55.26%), Postives = 105/152 (69.08%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPR-ERLDILKVISRKLPLADDVDL 448
            G GKT +  A A  CSL F+SVKGPEL+N Y+G SE+ VR++F++A AAAPC++FFDE DS+AP RG   D+ GV DRVV+Q L ELDG+     VFV  AT+RPDLLD ALLRPGR D+L+F      R  +L +L  I+RK  L   V L
Sbjct:  748 GTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASEDRASQLRVLSAITRKFKLEASVSL 899          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX6_HUMAN (Peroxisome assembly factor 2 OS=Homo sapiens GN=PEX6 PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 2.302e-39
Identity = 84/152 (55.26%), Postives = 105/152 (69.08%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPR-ERLDILKVISRKLPLADDVDL 448
            G GKT +  A A  CSL F+SVKGPEL+N Y+G SE+ VR++F++A AAAPC++FFDE DS+AP RG   D+ GV DRVV+Q L ELDG+     VFV  AT+RPDLLD ALLRPGR D+L+F      R  +L +L  I+RK  L   V L
Sbjct:  747 GTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGANEDRASQLRVLSAITRKFKLEPSVSL 898          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX6_YEAST (Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisiae GN=PEX6 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.492e-38
Identity = 87/159 (54.72%), Postives = 110/159 (69.18%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGVEV-LTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFP-SPRERLDILKVISRKLPLADDVDLEAIAHM 466
            G GKT +  A A   SL F SVKGPELLN YIG SE  VR +F KA  A PC++FFDE DS+APKRG+  D+ GV DR+V+Q L ELDG+     GVFV  AT+RPDLLD ALLRPGR D+LL+   P +  ++L+IL+ ++RK  L +DV L  +A +
Sbjct:  775 GTGKTLMAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKAREAKPCVIFFDEIDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSTDADGVFVIGATNRPDLLDEALLRPGRFDKLLYLGIPDTDTKQLNILEALTRKFVLDNDVKLIELAKL 933          
The following BLAST results are available for this feature:
BLAST of CX289487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
CDC48_SOYBN6.057e-4053.85Cell division cycle protein 48 homolog OS=Glycine ... [more]
CDAT_PLAF76.057e-4051.30Putative cell division cycle ATPase OS=Plasmodium ... [more]
CDC48_EMENI7.911e-4055.77Cell division control protein 48 OS=Emericella nid... [more]
Y1297_ARCFU1.033e-3953.90Cell division cycle protein 48 homolog AF_1297 OS=... [more]
CDC48_SCHPO1.033e-3955.48Cell division cycle protein 48 OS=Schizosaccharomy... [more]
CDC48_ENCCU1.033e-3950.97Cell division control protein 48 OS=Encephalitozoo... [more]
PEX6_RAT2.302e-3955.26Peroxisome assembly factor 2 OS=Rattus norvegicus ... [more]
PEX6_MOUSE2.302e-3955.26Peroxisome assembly factor 2 OS=Mus musculus GN=Pe... [more]
PEX6_HUMAN2.302e-3955.26Peroxisome assembly factor 2 OS=Homo sapiens GN=PE... [more]
PEX6_YEAST1.492e-3854.72Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionC02013G12SK IF1 Citrus clementina cDNA clone C02013G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289487 ID=CX289487; Name=CX289487; organism=Citrus clementina; type=EST; length=468bp
TGGTTGTGGCAAGACTCACATAGTTGGTGCTGCTGCTGCTGCTTGTTCAT
TACGATTTATATCAGTGAAAGGGCCTGAGCTGTTGAACAAATACATTGGT
GCTTCTGAGCAAGCTGTTCGGGATATATTCTCAAAAGCAACTGCTGCAGC
ACCATGCCTCCTCTTTTTTGATGAATTTGATTCTATTGCCCCAAAGCGAG
GGCATGATAATACTGGAGTGACTGATCGTGTTGTTAATCAGTTTCTGACT
GAGTTAGATGGCGTTGAAGTGTTGACTGGTGTATTTGTGTTTGCTGCAAC
AAGTAGACCGGATCTACTTGATGCTGCCCTGTTAAGACCTGGTAGGCTGG
ATCGCCTTCTCTTCTGTGATTTTCCATCTCCACGTGAGAGGTTGGATATT
CTTAAAGTTATTTCTAGAAAGTTACCATTGGCCGATGATGTTGATTTAGA
AGCCATAGCTCATATGAC
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