CX289487

Overview
NameCX289487
Unique NameCX289487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length468
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: YCF46_GUITH (Uncharacterized AAA domain-containing protein ycf46 OS=Guillardia theta GN=ycf46 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.652e-11
Identity = 48/142 (33.80%), Postives = 66/142 (46.48%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN-TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKL 424
            G GK+    + A   +L  + +    L    IG SE  VR +   A   +PC+L+ DE D        +N +G T RV   F+T L   E  + VFV A  +  D L   LLR GR D + F   P  +ER  I KV  +K+
Sbjct:  285 GTGKSLTAKSIANEWNLPLLKLDVGRLFGGIIGESEARVRQMIQFAETISPCILWIDEIDKAFTGSNFNNDSGTTKRVFGTFITWLS--EKKSPVFVVATANNIDSLPPELLRKGRFDEVFFIGLPDLKERECIFKVHLKKI 424          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: YCF46_PORYE (Uncharacterized AAA domain-containing protein ycf46 OS=Porphyra yezoensis GN=ycf46 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.716e-11
Identity = 41/137 (29.93%), Postives = 69/137 (50.36%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFD-SIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKV 409
            G GK+    A A+   L  + +   +L    +G SE  +R++ + +   +PC+L+ DE D + +      ++G + RV   F+T L   E    VFV A  ++   L + +LR GR D + F D P+ +ER  I K+
Sbjct:  269 GTGKSLTAKAIASDWMLPLLRLDMGKLFGGLVGESESKMREMINISEGLSPCILWIDEIDKAFSGLHSQGDSGTSARVFGTFITWLS--EKKAPVFVVATANKIQSLPSEMLRKGRFDEIFFLDLPNRQERESIFKI 403          
The following BLAST results are available for this feature:
BLAST of CX289487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
YCF46_GUITH2.652e-1133.80Uncharacterized AAA domain-containing protein ycf4... [more]
YCF46_PORYE7.716e-1129.93Uncharacterized AAA domain-containing protein ycf4... [more]

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Properties
Property NameValue
Genbank descriptionC02013G12SK IF1 Citrus clementina cDNA clone C02013G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289487 ID=CX289487; Name=CX289487; organism=Citrus clementina; type=EST; length=468bp
TGGTTGTGGCAAGACTCACATAGTTGGTGCTGCTGCTGCTGCTTGTTCAT
TACGATTTATATCAGTGAAAGGGCCTGAGCTGTTGAACAAATACATTGGT
GCTTCTGAGCAAGCTGTTCGGGATATATTCTCAAAAGCAACTGCTGCAGC
ACCATGCCTCCTCTTTTTTGATGAATTTGATTCTATTGCCCCAAAGCGAG
GGCATGATAATACTGGAGTGACTGATCGTGTTGTTAATCAGTTTCTGACT
GAGTTAGATGGCGTTGAAGTGTTGACTGGTGTATTTGTGTTTGCTGCAAC
AAGTAGACCGGATCTACTTGATGCTGCCCTGTTAAGACCTGGTAGGCTGG
ATCGCCTTCTCTTCTGTGATTTTCCATCTCCACGTGAGAGGTTGGATATT
CTTAAAGTTATTTCTAGAAAGTTACCATTGGCCGATGATGTTGATTTAGA
AGCCATAGCTCATATGAC
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