CX289487

Overview
NameCX289487
Unique NameCX289487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length468
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX6_YARLI (Peroxisomal biogenesis factor 6 OS=Yarrowia lipolytica GN=PEX6 PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 4.341e-38
Identity = 86/158 (54.43%), Postives = 107/158 (67.72%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGVEVL--TGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLD-ILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   SL F SVKGPELLN YIG SE  VR +F KA  A PC++FFDE DS+AP+RG+  D+ GV DR+V+Q L ELDG+      GVFV  AT+RPDLLD ALLRPGR D++L+       E+   I++ ++RK  LA DV LEAI+
Sbjct:  762 GTGKTLLAKAIATTFSLNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVVFFDELDSVAPQRGNQGDSGGVMDRIVSQLLAELDGMSTAGGEGVFVVGATNRPDLLDEALLRPGRFDKMLYLGISDTHEKQQTIMEALTRKFRLAADVSLEAIS 919          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: AFG2_SCHPO (ATPase family gene 2 protein OS=Schizosaccharomyces pombe GN=afg2 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.341e-38
Identity = 79/153 (51.63%), Postives = 105/153 (68.63%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            GC KT    A A    L FI+VKGPEL +K++G SE+AVR +F KA  A+P ++FFDE D++   RG DN+  +DRVV   L ELDG+E L  V V AAT+RPD++D AL+RPGRLDRLL+   P+   R  I+K+ + K+  A+DVDL+ IA
Sbjct:  592 GCSKTITAKAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQKARQASPSVIFFDEIDALTANRGEDNS--SDRVVAALLNELDGIEALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDLDLIA 742          

HSP 2 Score: 111.694 bits (278), Expect = 1.601e-24
Identity = 61/154 (39.61%), Postives = 90/154 (58.44%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLP-LADDVDLEAIA 460
            G GKT ++ A AA  + +  ++ GP ++ KY+G +E  +R IF  A A  P ++F DE D++APKR  D +    R V   LT LDG+     V V AAT+RP+ +D AL RPGRL++ +    P    RLDI+K++   +P   +D  LE +A
Sbjct:  323 GTGKTMVMRAVAAEANAQVFTIDGPSVVGKYLGETESRLRKIFEDARAHQPSIIFIDEIDALAPKRTEDVSEAESRAVATLLTLLDGMANAGKVVVIAATNRPNSIDEALRRPGRLEKEIEIGIPDKSARLDIIKLLLSGVPNEINDAQLEDLA 476          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX6_DEBHA (Peroxisomal biogenesis factor 6 OS=Debaryomyces hansenii GN=PEX6 PE=3 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 1.263e-37
Identity = 88/161 (54.66%), Postives = 107/161 (66.46%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGVEVLT-----GVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLD-ILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   SL F SVKGPELLN YIG SE  VR +F KA  A PC++FFDE DS+APKRG+  D+ GV DR+V+Q L ELDG+         GVFV  AT+RPDLLD ALLRPGR D++L+       E+   IL+ ++RK  LAD+VDL  IA
Sbjct:  882 GTGKTLLAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGGAEGGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGISDTDEKQSKILEALTRKFKLADNVDLYEIA 1042          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: SPAT5_MOUSE (Spermatogenesis-associated protein 5 OS=Mus musculus GN=Spata5 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 2.154e-37
Identity = 75/154 (48.70%), Postives = 107/154 (69.48%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN--TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAI 457
            GC KT I  A A    L F+++KGPEL+NKY+G SE+AVR+IF KA A AP ++FFDE D++A +RG  +    V DRV+ Q LTE+DG+E L  V V AAT+RPD +D AL+RPGR+DR+++   P    R +IL +    +P++++VDL+ +
Sbjct:  671 GCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAGNVADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPISNEVDLDEL 824          

HSP 2 Score: 106.686 bits (265), Expect = 5.151e-23
Identity = 60/145 (41.38%), Postives = 86/145 (59.31%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV--EVLTG-VFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLP 427
            G GKT I  A A         + GPE+++K+ G +E  +R IF++AT   P ++F DE D++ PKR    + V  RVV   LT +DG+  E   G V V  AT+RP  LDAAL RPGR D+ +    P+ ++RLDIL+ + R++P
Sbjct:  397 GTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVEKRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFDKEIEIGIPNAQDRLDILQKLLRRVP 541          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX6_ASHGO (Peroxisomal biogenesis factor 6 OS=Ashbya gossypii GN=PEX6 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 3.675e-37
Identity = 84/157 (53.50%), Postives = 106/157 (67.52%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGVEV-LTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRER-LDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   SL F SVKGPELLN YIG SE  VR +F +A  A PC++FFDE DS+APKRG+  D+ GV DR+V+Q L ELDG+     G+FV  AT+RPDLLD ALLRPGR D+LL+       E+  +IL+ ++RK  L  DV L+ +A
Sbjct:  766 GTGKTLLAKAVATNFSLNFFSVKGPELLNMYIGESEANVRRVFQRARDAKPCVIFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGLSTGGDGLFVIGATNRPDLLDEALLRPGRFDKLLYLGISDTNEKQANILRALTRKFTLDPDVSLDDLA 922          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: CD48C_ARATH (Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 3.675e-37
Identity = 77/153 (50.33%), Postives = 100/153 (65.36%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            GCGKT I  AAA      F+ +KG ELLNKY+G SE A+R +F +A   APC++FFDE D++   RG +   V +R++NQFL ELDG E    V+V  AT+RPD++D A LRPGR   LL+   P+  ER  ILK I+RK P+   VDL+ IA
Sbjct:  572 GCGKTLIAKAAANEAGANFMHIKGAELLNKYVGESELAIRTLFQRARTCAPCVIFFDEVDALTTSRGKEGAWVVERLLNQFLVELDGGE-RRNVYVIGATNRPDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIA 723          

HSP 2 Score: 100.908 bits (250), Expect = 2.827e-21
Identity = 60/165 (36.36%), Postives = 87/165 (52.73%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG---------VEVLTG-VFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHM 466
            GCGKT +  A A    + F  +   E+++   GASE+ +R++FSKA   AP ++F DE D+I  KR +    +  R+V Q LT +DG          +   G V V  AT+RPD LD AL R GR +  +    P    R +IL V+++KL L    D + IA +
Sbjct:  277 GCGKTKLANAIANEAGVPFYKISATEVISGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIGSKRENQQREMEKRIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEGPFDKKRIARL 441          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX6_PENCH (Peroxisomal biogenesis factor 6 OS=Penicillium chrysogenum GN=pex6 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.799e-37
Identity = 85/160 (53.12%), Postives = 108/160 (67.50%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGV----EVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDF-PSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   SL F SVKGPELLN YIG SE  VR +F +A  A PC++FFDE DS+APKRG+  D+ GV DR+V+Q L ELDG+    E   GVFV  AT+RPDLLD ALLRPGR D++L+     + R++  IL+ ++RK  L  DV L+ +A
Sbjct: 1073 GTGKTLLAKAIATEFSLNFFSVKGPELLNMYIGESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMNGGEENSGGVFVIGATNRPDLLDTALLRPGRFDKMLYLGVSDTHRKQATILEALTRKFALHPDVSLDRVA 1232          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: CDC48_YEAST (Cell division control protein 48 OS=Saccharomyces cerevisiae GN=CDC48 PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 8.186e-37
Identity = 83/156 (53.21%), Postives = 100/156 (64.10%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH---DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   S  FISVKGPELL+ + G SE  +RDIF KA AAAP ++F DE DSIA  RG    D  G +DRVVNQ LTE+DG+     VFV  AT+RPD +D A+LRPGRLD+L++   P    RL IL    RK PL   ++L AIA
Sbjct:  531 GTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSLGDAGGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPAILRPGRLDQLIYVPLPDENARLSILNAQLRKTPLEPGLELTAIA 686          

HSP 2 Score: 126.331 bits (316), Expect = 6.283e-29
Identity = 68/153 (44.44%), Postives = 94/153 (61.44%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A      F  + GPE+++K  G SE  +R  F +A   AP ++F DE DSIAPKR   N  V  RVV+Q LT +DG++  + V V AAT+RP+ +D AL R GR DR +    P    RL++L++ ++ + LADDVDLEA+A
Sbjct:  258 GTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEVLRIHTKNMKLADDVDLEALA 410          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX6_KLULA (Peroxisomal biogenesis factor 6 OS=Kluyveromyces lactis GN=PEX6 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.069e-36
Identity = 83/157 (52.87%), Postives = 108/157 (68.79%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGVEV-LTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDF-PSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A+  SL F SVKGPELLN YIG SE  VR +F KA  A PC++FFDE DS+APKRG+  D+ GV DR+V+Q L ELDG+     GVFV  AT+RPDLLD ALLRPGR D++L+     + +++ +I+K ++RK  L   +D+  IA
Sbjct:  745 GTGKTLLAKAIASNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSSGGDGVFVIGATNRPDLLDEALLRPGRFDKMLYLGISDTDKKQANIIKALTRKFTLESGIDILDIA 901          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX6_CANGA (Peroxisomal biogenesis factor 6 OS=Candida glabrata GN=PEX6 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.069e-36
Identity = 80/156 (51.28%), Postives = 107/156 (68.59%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGVEV-LTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRER-LDILKVISRKLPLADDVDLEAI 457
            G GKT +  A A   SL F SVKGPELLN YIG SE  VR +F KA  A PC++FFDE DS+APKRG+  D+ GV DR+V+Q L ELDG+     GVF+  AT+RPDLLD ALLRPGR D+L++      RE+  +I++ ++RK  ++ D++ + +
Sbjct:  761 GTGKTLLAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDEVDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSSDGDGVFIIGATNRPDLLDEALLRPGRFDKLIYLGIADTREKQANIMRALTRKFKVSSDINFDEL 916          
The following BLAST results are available for this feature:
BLAST of CX289487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
PEX6_YARLI4.341e-3854.43Peroxisomal biogenesis factor 6 OS=Yarrowia lipoly... [more]
AFG2_SCHPO4.341e-3851.63ATPase family gene 2 protein OS=Schizosaccharomyce... [more]
PEX6_DEBHA1.263e-3754.66Peroxisomal biogenesis factor 6 OS=Debaryomyces ha... [more]
SPAT5_MOUSE2.154e-3748.70Spermatogenesis-associated protein 5 OS=Mus muscul... [more]
PEX6_ASHGO3.675e-3753.50Peroxisomal biogenesis factor 6 OS=Ashbya gossypii... [more]
CD48C_ARATH3.675e-3750.33Cell division control protein 48 homolog C OS=Arab... [more]
PEX6_PENCH4.799e-3753.13Peroxisomal biogenesis factor 6 OS=Penicillium chr... [more]
CDC48_YEAST8.186e-3753.21Cell division control protein 48 OS=Saccharomyces ... [more]
PEX6_KLULA1.069e-3652.87Peroxisomal biogenesis factor 6 OS=Kluyveromyces l... [more]
PEX6_CANGA1.069e-3651.28Peroxisomal biogenesis factor 6 OS=Candida glabrat... [more]

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Properties
Property NameValue
Genbank descriptionC02013G12SK IF1 Citrus clementina cDNA clone C02013G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289487 ID=CX289487; Name=CX289487; organism=Citrus clementina; type=EST; length=468bp
TGGTTGTGGCAAGACTCACATAGTTGGTGCTGCTGCTGCTGCTTGTTCAT
TACGATTTATATCAGTGAAAGGGCCTGAGCTGTTGAACAAATACATTGGT
GCTTCTGAGCAAGCTGTTCGGGATATATTCTCAAAAGCAACTGCTGCAGC
ACCATGCCTCCTCTTTTTTGATGAATTTGATTCTATTGCCCCAAAGCGAG
GGCATGATAATACTGGAGTGACTGATCGTGTTGTTAATCAGTTTCTGACT
GAGTTAGATGGCGTTGAAGTGTTGACTGGTGTATTTGTGTTTGCTGCAAC
AAGTAGACCGGATCTACTTGATGCTGCCCTGTTAAGACCTGGTAGGCTGG
ATCGCCTTCTCTTCTGTGATTTTCCATCTCCACGTGAGAGGTTGGATATT
CTTAAAGTTATTTCTAGAAAGTTACCATTGGCCGATGATGTTGATTTAGA
AGCCATAGCTCATATGAC
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