CX289487

Overview
NameCX289487
Unique NameCX289487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length468
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX6_GLOLA (Peroxisomal biogenesis factor 6 OS=Glomerella lagenarium GN=PEX6 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.824e-36
Identity = 83/160 (51.88%), Postives = 106/160 (66.25%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGV----EVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRER-LDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   SL F SVKGPELLN YIG SE  VR +F +A  A PC++FFDE DS+APKRG+  D+ GV DR+V+Q L ELDG+    +   GVFV  AT+RPDLLD ALLRPGR D++L+       ++ L IL+ ++RK  L   V L ++A
Sbjct: 1037 GTGKTLLAKAIATEYSLNFFSVKGPELLNMYIGESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGGDDTSGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQLKILEALTRKFTLHPSVSLHSVA 1196          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX6_PICAN (Peroxisomal biogenesis factor 6 OS=Pichia angusta GN=PEX6 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.382e-36
Identity = 85/159 (53.46%), Postives = 105/159 (66.04%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGV---EVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRER-LDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   +L F SVKGPELLN YIG SE  VR +F KA  A PC++FFDE DS+APKRG+  D+ GV DR+V+Q L ELDG+   E   GVFV  AT+RPDLLD ALLRPGR D++L+       E+   I++ ++RK  L   VDL  IA
Sbjct:  856 GTGKTLLAKAIATNFALNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGIADTHEKQAKIIQALTRKFQLDPSVDLGRIA 1014          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: SPAT5_HUMAN (Spermatogenesis-associated protein 5 OS=Homo sapiens GN=SPATA5 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 3.111e-36
Identity = 73/154 (47.40%), Postives = 105/154 (68.18%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD--NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAI 457
            GC KT I  A A    L F+++KGPEL+NKY+G SE+AVR+ F KA A AP ++FFDE D++A +RG       V DRV+ Q LTE+DG+E L  V + AAT+RPD +D AL+RPGR+DR+++   P    R +I K+    +P++++VDL+ +
Sbjct:  671 GCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVRETFRKARAVAPSIIFFDELDALAVERGSSLGAGNVADRVLAQLLTEMDGIEQLKDVTILAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREIFKLQFHSMPVSNEVDLDEL 824          

HSP 2 Score: 108.612 bits (270), Expect = 1.356e-23
Identity = 64/158 (40.51%), Postives = 93/158 (58.86%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV--EVLTG-VFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLP-LADDVDLEAIAH 463
            G GKT I  A A         + GPE+++K+ G +E  +R IF++AT   P ++F DE D++ PKR      V  RVV   LT +DG+  EV  G V V  AT+RP  LDAAL RPGR D+ +    P+ ++RLDIL+ + R++P L  + +L  +A+
Sbjct:  397 GTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSIIFIDELDALCPKREGAQNEVEKRVVASLLTLMDGIGSEVSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAQDRLDILQKLLRRVPHLLTEAELLQLAN 554          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX6_PICPA (Peroxisomal biogenesis factor 6 OS=Pichia pastoris GN=PEX6 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.111e-36
Identity = 83/159 (52.20%), Postives = 106/159 (66.67%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGV---EVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLD-ILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   +L F SVKGPELLN YIG SE  VR +F +A  A PC++FFDE DS+APKRG+  D+ GV DR+V+Q L ELDG+   +   GVFV  AT+RPDLLD ALLRPGR D++L+       E+   I++ +SRK  L   VDL+ +A
Sbjct:  862 GTGKTLLAKAIATNFALNFFSVKGPELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPKRGNQGDSEGVMDRIVSQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGVSDTHEKQSKIMEALSRKFHLHPSVDLDKVA 1020          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: AFG2_YEAST (ATPase family gene 2 protein OS=Saccharomyces cerevisiae GN=AFG2 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.016e-35
Identity = 74/154 (48.05%), Postives = 102/154 (66.23%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADD-VDLEAIA 460
            GC KT    A A    + F++VKGPE+ NKY+G SE+A+R+IF KA +AAP ++FFDE D+++P R   +T   + V+   L E+DGVE L GV + AAT+RPD +DAALLRPGRLDR ++   P    RL+ILK  ++K    +  VDL  +A
Sbjct:  560 GCSKTLTAKALATESGINFLAVKGPEIFNKYVGESERAIREIFRKARSAAPSIIFFDEIDALSPDRDGSSTSAANHVLTSLLNEIDGVEELKGVVIVAATNRPDEIDAALLRPGRLDRHIYVGPPDVNARLEILKKCTKKFNTEESGVDLHELA 713          

HSP 2 Score: 110.923 bits (276), Expect = 2.732e-24
Identity = 64/157 (40.76%), Postives = 93/157 (59.24%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG-VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDIL-KVISRKLPLADDVDLEAIAHM 466
            G GKT ++   A   +   +++ GP +++KY+G +E A+RDIF++A    P ++F DE DSIAP R +D++G V  RVV   LT +DG+     V V AAT+RP+ +D AL RPGR D+ +    P    R DIL K  SR       +D EAI ++
Sbjct:  289 GTGKTMLLRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKYQPSIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGMGAAGKVVVIAATNRPNSVDPALRRPGRFDQEVEIGIPDVDARFDILTKQFSRMSSDRHVLDSEAIKYI 445          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX6_NEUCR (Peroxisomal biogenesis factor 6 OS=Neurospora crassa GN=pex-6 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.492e-35
Identity = 81/160 (50.62%), Postives = 105/160 (65.62%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGVEVLT----GVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRER-LDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   SL F SVKGPELLN YIG SE  VR +F +A  A PC++FFDE DS+APKRG+  D+ GV DR+V+Q L ELDG+        GVFV  AT+RPDLLD ALLRPGR D++L+       ++ + I++ ++RK  L   V L ++A
Sbjct: 1034 GTGKTLLAKAIATEYSLNFFSVKGPELLNMYIGESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGGEGGGGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQVTIMEALTRKFTLHPTVSLRSVA 1193          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: CDCH_HALSA (Protein cdcH OS=Halobacterium salinarium GN=cdcH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.229e-34
Identity = 77/154 (50.00%), Postives = 102/154 (66.23%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN-TGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   +  FISV+GP+LL+K++G SE+A+R  F KA   AP ++FFDE DS+AP RG      V++RVVNQ LTELDG+E +  V V AAT+RPD++D AL+R GR DRL+    P    R  ILK+ ++  PLA DV L  +A
Sbjct:  506 GTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQVAPTVIFFDELDSLAPGRGQTGGNNVSERVVNQLLTELDGLEEMEEVMVIAATNRPDIIDPALIRSGRFDRLVQVGQPGIEGREQILKIHTQDTPLAADVSLRELA 659          

HSP 2 Score: 129.413 bits (324), Expect = 7.421e-30
Identity = 72/153 (47.06%), Postives = 94/153 (61.44%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   S  F S+ GPE+++KY G SEQ +R+IF  A   +P ++F DE DSIAPKR      V  RVV Q LT +DG+E    V V AAT+R D +D AL RPGR DR +    P    R +ILK+ +R +PL+DDV+L  +A
Sbjct:  233 GTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDDSPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLEGRGQVIVIAATNRVDAVDPALRRPGRFDREIEIGVPDEIGREEILKIHTRGMPLSDDVNLSTLA 385          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX6_SCHPO (Peroxisomal ATPase pex6 OS=Schizosaccharomyces pombe GN=pex6 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 8.472e-34
Identity = 76/158 (48.10%), Postives = 103/158 (65.19%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGVEVLTG--VFVFAATSRPDLLDAALLRPGRLDRLLFCDF-PSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   SL F+S+KGPELLN Y+G SE  VR++F KA  ++PC++FFDE DSIAP RG+  D+  V DRVV+Q L ELD +       VFV  AT+RPDLLD +LLRPGR D+L++     S   +  +L+ +++   L + +DL  IA
Sbjct:  698 GTGKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARNSSPCVIFFDELDSIAPHRGNSSDSGNVMDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLRPGRFDKLVYLGINKSEESKASMLRALTKTFKLDETIDLNEIA 855          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH_CYAME (Cell division protease ftsH homolog OS=Cyanidioschyzon merolae GN=ftsH PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.551e-30
Identity = 71/156 (45.51%), Postives = 93/156 (59.62%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A   S+ F S+ G E +  ++G     VRD+F KA   APCL+F DE D++  +RG    G  D   + +NQ LTE+DG E  TGV V AAT+R D+LDAALLRPGR DR +    P  + R+ ILKV + +  L   V LEA+A
Sbjct:  197 GTGKTLLAKAIAGEASVPFFSISGSEFVEMFVGVGASRVRDLFKKAKQNAPCLVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRVDVLDAALLRPGRFDRQIMVSMPDVKSRIAILKVHANQKKLHPQVSLEAVA 352          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: SPA5L_HUMAN (Spermatogenesis-associated protein 5-like protein 1 OS=Homo sapiens GN=SPATA5L1 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.351e-30
Identity = 72/174 (41.38%), Postives = 101/174 (58.05%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG--VTDRVVNQFLTELDGVEVLT-------------------GVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            GC KT +V A A +C   F+SV G +L + ++G SE+ +  IF +A A+ P +LF DE DSI   R    TG  V +RV++  L ELDGV + T                    V + AAT+RPD+LD ALLRPGRLD++++   P  + RL ILKV ++ +P+  DV LE +A
Sbjct:  508 GCAKTTLVRALATSCHCSFVSVSGADLFSPFVGDSEKVLSQIFRQARASTPAILFLDEIDSILGARSASKTGCDVQERVLSVLLNELDGVGLKTIERRGSKSSQQEFQEVFNRSVMIIAATNRPDVLDTALLRPGRLDKIIYIPPPDHKGRLSILKVCTKTMPIGPDVSLENLA 681          

HSP 2 Score: 110.153 bits (274), Expect = 4.659e-24
Identity = 66/158 (41.77%), Postives = 89/158 (56.33%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAA---PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHM 466
            G GKT +V A A       ++V  P L     G +E+ VR +F +A   A   P LLF DE D++ P+RG  +     RVV Q LT LDG      V V  AT+RPD LD AL RPGR DR +    P+ ++R +IL+VI+ K+P++  VDL  +A M
Sbjct:  244 GVGKTQLVQAVAREAGAELLAVSAPALQGSRPGETEENVRRVFQRARELASRGPSLLFLDEMDALCPQRG--SRAPESRVVAQVLTLLDGASGDREVVVVGATNRPDALDPALRRPGRFDREVVIGTPTLKQRKEILQVITSKMPISSHVDLGLLAEM 399          
The following BLAST results are available for this feature:
BLAST of CX289487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
PEX6_GLOLA1.824e-3651.88Peroxisomal biogenesis factor 6 OS=Glomerella lage... [more]
PEX6_PICAN2.382e-3653.46Peroxisomal biogenesis factor 6 OS=Pichia angusta ... [more]
SPAT5_HUMAN3.111e-3647.40Spermatogenesis-associated protein 5 OS=Homo sapie... [more]
PEX6_PICPA3.111e-3652.20Peroxisomal biogenesis factor 6 OS=Pichia pastoris... [more]
AFG2_YEAST2.016e-3548.05ATPase family gene 2 protein OS=Saccharomyces cere... [more]
PEX6_NEUCR4.492e-3550.63Peroxisomal biogenesis factor 6 OS=Neurospora cras... [more]
CDCH_HALSA2.229e-3450.00Protein cdcH OS=Halobacterium salinarium GN=cdcH P... [more]
PEX6_SCHPO8.472e-3448.10Peroxisomal ATPase pex6 OS=Schizosaccharomyces pom... [more]
FTSH_CYAME2.551e-3045.51Cell division protease ftsH homolog OS=Cyanidiosch... [more]
SPA5L_HUMAN4.351e-3041.38Spermatogenesis-associated protein 5-like protein ... [more]

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Properties
Property NameValue
Genbank descriptionC02013G12SK IF1 Citrus clementina cDNA clone C02013G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289487 ID=CX289487; Name=CX289487; organism=Citrus clementina; type=EST; length=468bp
TGGTTGTGGCAAGACTCACATAGTTGGTGCTGCTGCTGCTGCTTGTTCAT
TACGATTTATATCAGTGAAAGGGCCTGAGCTGTTGAACAAATACATTGGT
GCTTCTGAGCAAGCTGTTCGGGATATATTCTCAAAAGCAACTGCTGCAGC
ACCATGCCTCCTCTTTTTTGATGAATTTGATTCTATTGCCCCAAAGCGAG
GGCATGATAATACTGGAGTGACTGATCGTGTTGTTAATCAGTTTCTGACT
GAGTTAGATGGCGTTGAAGTGTTGACTGGTGTATTTGTGTTTGCTGCAAC
AAGTAGACCGGATCTACTTGATGCTGCCCTGTTAAGACCTGGTAGGCTGG
ATCGCCTTCTCTTCTGTGATTTTCCATCTCCACGTGAGAGGTTGGATATT
CTTAAAGTTATTTCTAGAAAGTTACCATTGGCCGATGATGTTGATTTAGA
AGCCATAGCTCATATGAC
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