CX289487

Overview
NameCX289487
Unique NameCX289487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length468
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.351e-30
Identity = 76/158 (48.10%), Postives = 95/158 (60.13%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKR---GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHM 466
            G GKT +  A A      FI V G EL+NK+IG   + VR+IF  A   AP +LF DE D+IA KR   G        R + Q L ELDG + L  V V AAT+R DL+D A+LRPGR DR++    PS R RL+IL + +RK  +A DVDLEAIA +
Sbjct:  183 GTGKTLLAKAVAGETEATFIRVVGSELVNKFIGEGARLVREIFRLAREKAPSILFIDEIDAIASKRVDIGTSGDREVQRTMLQLLAELDGFDPLDNVKVIAATNRLDLIDPAVLRPGRFDRIIEVPLPSLRGRLEILGIHTRKAKMAPDVDLEAIAKL 340          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH4_SYNY3 (Cell division protease ftsH homolog 4 OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.351e-30
Identity = 68/156 (43.59%), Postives = 95/156 (60.90%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F S+ G E +  ++G     VRD+F +A A APC++F DE D++  +RG    G  D   + +NQ LTE+DG E  TG+ + AAT+RPD+LD+AL+RPGR DR +  D P    R +IL V +R   L+ DVDL+ IA
Sbjct:  204 GTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKANAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIVAATNRPDVLDSALMRPGRFDRQVVVDRPDYAGRREILNVHARGKTLSQDVDLDKIA 359          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.682e-30
Identity = 69/157 (43.95%), Postives = 92/157 (58.60%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG----VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + FISV G + +  ++G     VRD+F  A   APC++F DE D++   RG    G      ++ +NQ L E+DG +   G+ V AAT+RPD+LD ALLRPGR DR +F   P  R R +ILKV +R   LA DVDLE +A
Sbjct:  198 GVGKTLLAKAIAGEAHVPFISVSGSDFVEMFVGVGAARVRDLFETAKKHAPCIIFIDEIDAVGRARGAIPVGGGHDEREQTLNQLLVEMDGFDTSDGIIVIAATNRPDILDPALLRPGRFDRQIFIPKPDVRGRYEILKVHARNKKLAKDVDLEFVA 354          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.682e-30
Identity = 67/156 (42.95%), Postives = 95/156 (60.90%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F S+ G E +  ++G     VRD+F KA   APCL+F DE D++  +RG    G  D   + +NQ LTE+DG E  TG+ + AAT+RPD+LD+AL+RPGR DR +  D P    R +IL+V +R   LA +V +++IA
Sbjct:  215 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSALMRPGRFDRQVMVDAPDYSGRKEILEVHARNKKLAPEVSIDSIA 370          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 7.421e-30
Identity = 72/156 (46.15%), Postives = 92/156 (58.97%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F S    E +  ++G     VRD+F KA A APC++F DE D++  +RG    G  D   + +NQ LTE+DG    +GV V AAT+RPD+LDAALLRPGR DR +  D P    R+ IL+V SR   LA DVD E IA
Sbjct:  275 GTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFAGNSGVIVLAATNRPDVLDAALLRPGRFDRQVTVDRPDVAGRVKILEVHSRGKALAKDVDFEKIA 430          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: CD48B_ARATH (Cell division control protein 48 homolog B OS=Arabidopsis thaliana GN=CDC48B PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 7.421e-30
Identity = 68/157 (43.31%), Postives = 98/157 (62.42%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG----VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            GC KT +  AAA A    F S+   EL + Y+G  E  +R+ F +A  A+P ++FFDE D +A KRG +++     V +R+++  LTE+DG+E   G+ V AAT+RP  +DAAL+RPGR D +L+   P    R +IL+V +R + L DDVDL  IA
Sbjct:  330 GCSKTTLAKAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEADVVACKRGDESSSNSSTVGERLLSTLLTEMDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARFEILQVHTRNMTLGDDVDLRKIA 486          

HSP 2 Score: 82.8037 bits (203), Expect = 7.966e-16
Identity = 55/161 (34.16%), Postives = 87/161 (54.04%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAA----PCLLFFDEFDSIAPKRGHDNTGVTD-RVVNQFLTELDGVEVLTG---VFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +V A    C    I +    +   + G SE+ +R+ F++A++ A    P ++F DE D + P+R  D     D R+ +Q  T +D  +  +    V V A+T+R D +D AL R GR D L+    P+  +RL IL++ ++K+ L   VDL+AIA
Sbjct:   66 GTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSDKPSVIFIDEIDVLCPRR--DARREQDVRIASQLFTLMDSNKPSSSAPRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKILQLYTKKVNLDPSVDLQAIA 224          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.653e-29
Identity = 71/158 (44.94%), Postives = 95/158 (60.13%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHM 466
            G GKT +  A A   +  FI V G EL+ K+IG     V+DIF  A   AP ++F DE D+IA KR    TG      R + Q L E+DG +    V +  AT+RPD+LD A+LRPGR DR++    P  + RL+ILK+ +RK+ LA+DV+LE IA M
Sbjct:  214 GTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKM 371          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.653e-29
Identity = 70/156 (44.87%), Postives = 92/156 (58.97%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F S+ G E +  ++G     VRD+F KA   APC++F DE D++  +RG    G  D   + +NQ LTE+DG E  TGV V AAT+R D+LD+ALLRPGR DR +  D P  + R DILKV +      +DV LE IA
Sbjct:  270 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAGNKKFDNDVSLEIIA 425          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.159e-29
Identity = 67/156 (42.95%), Postives = 92/156 (58.97%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F ++ G + +  ++G     VRD+F +A  AAPC++F DE D++  +RG    G  D   + +NQ L E+DG E   G+ V AAT+RPD+LD ALLRPGR DR +    P  R R  ILKV  R++PLA D+D   IA
Sbjct:  195 GTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIA 350          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.159e-29
Identity = 67/156 (42.95%), Postives = 92/156 (58.97%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTD---RVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A    + F ++ G + +  ++G     VRD+F +A  AAPC++F DE D++  +RG    G  D   + +NQ L E+DG E   G+ V AAT+RPD+LD ALLRPGR DR +    P  R R  ILKV  R++PLA D+D   IA
Sbjct:  195 GTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIA 350          
The following BLAST results are available for this feature:
BLAST of CX289487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
PSMR_AERPE4.351e-3048.10Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
FTSH4_SYNY34.351e-3043.59Cell division protease ftsH homolog 4 OS=Synechocy... [more]
FTSH_AQUAE5.682e-3043.95Cell division protease ftsH homolog OS=Aquifex aeo... [more]
FTSH1_SYNY35.682e-3042.95Cell division protease ftsH homolog 1 OS=Synechocy... [more]
FTSH1_ORYSJ7.421e-3046.15Cell division protease ftsH homolog 1, chloroplast... [more]
CD48B_ARATH7.421e-3043.31Cell division control protein 48 homolog B OS=Arab... [more]
PSMR_METJA1.653e-2944.94Proteasome-activating nucleotidase OS=Methanocaldo... [more]
FTSH2_ARATH1.653e-2944.87Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH_SHIFL2.159e-2942.95Cell division protease ftsH OS=Shigella flexneri G... [more]
FTSH_SALTY2.159e-2942.95Cell division protease ftsH OS=Salmonella typhimur... [more]

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Properties
Property NameValue
Genbank descriptionC02013G12SK IF1 Citrus clementina cDNA clone C02013G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289487 ID=CX289487; Name=CX289487; organism=Citrus clementina; type=EST; length=468bp
TGGTTGTGGCAAGACTCACATAGTTGGTGCTGCTGCTGCTGCTTGTTCAT
TACGATTTATATCAGTGAAAGGGCCTGAGCTGTTGAACAAATACATTGGT
GCTTCTGAGCAAGCTGTTCGGGATATATTCTCAAAAGCAACTGCTGCAGC
ACCATGCCTCCTCTTTTTTGATGAATTTGATTCTATTGCCCCAAAGCGAG
GGCATGATAATACTGGAGTGACTGATCGTGTTGTTAATCAGTTTCTGACT
GAGTTAGATGGCGTTGAAGTGTTGACTGGTGTATTTGTGTTTGCTGCAAC
AAGTAGACCGGATCTACTTGATGCTGCCCTGTTAAGACCTGGTAGGCTGG
ATCGCCTTCTCTTCTGTGATTTTCCATCTCCACGTGAGAGGTTGGATATT
CTTAAAGTTATTTCTAGAAAGTTACCATTGGCCGATGATGTTGATTTAGA
AGCCATAGCTCATATGAC
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